A novel proteinase, PrtR, produced by the human vaginal isolate Lactobacillus rhamnosus strain BGT10 was identified and genetically characterized. The prtR gene and flanking regions were cloned and sequenced. The deduced amino acid sequence of PrtR shares characteristics that are common for other cell envelope proteinases (CEPs) characterized to date, but in contrast to the other cell surface subtilisin-like serine proteinases, it has a smaller and somewhat different B domain and lacks the helix domain, and the anchor domain has a rare sorting signal sequence. Furthermore, PrtR lacks the insert domain, which otherwise is situated inside the catalytic serine protease domain of all CEPs, and has a different cell wall spacer (W) domain similar to that of the cell surface antigen I and II polypeptides expressed by oral and vaginal streptococci. Moreover, the PrtR W domain exhibits significant sequence homology to the consensus sequence that has been shown to be the hallmark of human intestinal mucin protein. According to its ␣ S1 -and -casein cleavage efficacy, PrtR is an efficient proteinase at pH 6.5 and is distributed throughout all L. rhamnosus strains tested. Proteinase extracts of the BGT10 strain obtained with Ca 2؉ -free buffer at pH 6.5 were proteolytically active. The prtR promoter-like sequence was determined, and the minimal promoter region was defined by use of prtR-gusA operon fusions. The prtR expression is Casitone dependent, emphasizing that nitrogen depletion elevates its transcription. This is in correlation with the catalytic activity of the PrtR proteinase.Lactic acid bacteria (LAB) have multiple amino acid auxotrophies, and in order to grow in protein-rich media they depend on the expression of a complex proteolytic system. Most of the genetic and biochemical studies of the LAB proteolytic system have focused on strains used in production of fermented milk products, and these data have been extensively reviewed (28,31,34). Essentially, a cell wall-bound extracellular proteinase (CEP) is responsible for the breakdown of casein, the major milk protein, into oligopeptides. Oligopeptides are then transported via oligopeptide transport systems into the bacterial cell, where the intracellular peptidases hydrolyze different oligopeptides to free amino acids.Three distinctly different genes encoding CEPs, referred to as prtP, prtB, and prtH (50), have been cloned and sequenced from dairy LAB. The prtP genes from a number of different Lactococcus lactis strains and from Lactobacillus paracasei NCDO151 have been cloned and sequenced (31). The different prtP genes encode proteinases with greater than 95% sequence identity. Distinct prt genes have been found in thermophilic lactobacilli. Genes encoding PrtB and PrtH from Lactobacillus delbrueckii subsp. bulgaricus NCDO1489 and Lactobacillus helveticus CNRZ32, respectively, have been sequenced and characterized (15,42). In order to produce the enzymatically active PrtP, L. lactis and L. paracasei require the presence of an upstream-located and divergently ...