Abstract:Introduction: Cardiomyocytes derived from human induced pluripotent stem cells (hiPSC-CM) form spontaneously beating syncytia in-vitro. We evaluated whether hiPSC-CM are a compelling model of human cardiac pharmacology useful for early drug development. Methods: We measured hiPSC-CM beating frequency using Ca-sensitive dyes and a high-throughput screening system. We quantified the effects of 640 drugs with various structures and pharmacologies. Results: When tested at 1 µM, most drugs without direct effects on… Show more
“…In a validation study performed with many drugs approved for human use, we showed that the assay reacts to drugs used in human medicine as predicted by existing clinical data 5 . Because this method considers all potential effects on cardiac rhythm, it complements the Comprehensive in vitro Proarrhythmic assay (CiPA) initiative 14 that specifically assesses pro-arrhythmic potential.…”
Section: Discussionmentioning
confidence: 86%
“…Blockers of cardiac ion channels affect the rhythm of the cardiomyocytes in a reproducible manner 5 . Amlodipine, a blocker of the slow Ca channels 9 , accelerates the rhythm more than 100% in a concentration-dependent manner up to 1 µM ( Figure 2A ).…”
Section: Representative Resultsmentioning
confidence: 99%
“…These hiPSC-CM can be obtained in large numbers through commercial providers or through production in the laboratory, and they are a useful source of cells to generate models of human cardiac physiology and pharmacology. In particular, they can be used to predict or to characterize cardiac effects that may occur when a drug is administered to humans 5 .…”
Spontaneously contracting syncytia of cardiomyocytes derived from human-induced pluripotent stem cells (hiPSC-CM) are a useful model of human cardiac physiology and pharmacology. Various methods have been proposed to record this spontaneous activity and to evaluate drug effects, but many of these methods suffer from limited throughput and/or physiological relevance. We developed a high-throughput screening system to quantify the effects of exogenous compounds on hiPSC-CM's beating frequency, using a Ca-sensitive fluorescent dye and a temperature-controlled imaging multi-well plate reader. We describe how to prepare the cell plates and the compound plates and how to run the automated assay to achieve high sensitivity and reproducibility. We also describe how to transform and analyze the fluorescence data to provide reliable measures of drug effects on spontaneous rhythm. This assay can be used in drug discovery programs to guide chemical optimization away from, or toward, compounds affecting human cardiac function.
“…In a validation study performed with many drugs approved for human use, we showed that the assay reacts to drugs used in human medicine as predicted by existing clinical data 5 . Because this method considers all potential effects on cardiac rhythm, it complements the Comprehensive in vitro Proarrhythmic assay (CiPA) initiative 14 that specifically assesses pro-arrhythmic potential.…”
Section: Discussionmentioning
confidence: 86%
“…Blockers of cardiac ion channels affect the rhythm of the cardiomyocytes in a reproducible manner 5 . Amlodipine, a blocker of the slow Ca channels 9 , accelerates the rhythm more than 100% in a concentration-dependent manner up to 1 µM ( Figure 2A ).…”
Section: Representative Resultsmentioning
confidence: 99%
“…These hiPSC-CM can be obtained in large numbers through commercial providers or through production in the laboratory, and they are a useful source of cells to generate models of human cardiac physiology and pharmacology. In particular, they can be used to predict or to characterize cardiac effects that may occur when a drug is administered to humans 5 .…”
Spontaneously contracting syncytia of cardiomyocytes derived from human-induced pluripotent stem cells (hiPSC-CM) are a useful model of human cardiac physiology and pharmacology. Various methods have been proposed to record this spontaneous activity and to evaluate drug effects, but many of these methods suffer from limited throughput and/or physiological relevance. We developed a high-throughput screening system to quantify the effects of exogenous compounds on hiPSC-CM's beating frequency, using a Ca-sensitive fluorescent dye and a temperature-controlled imaging multi-well plate reader. We describe how to prepare the cell plates and the compound plates and how to run the automated assay to achieve high sensitivity and reproducibility. We also describe how to transform and analyze the fluorescence data to provide reliable measures of drug effects on spontaneous rhythm. This assay can be used in drug discovery programs to guide chemical optimization away from, or toward, compounds affecting human cardiac function.
“…We updated network parameters ( +1 ) using adaptive momentum estimation (ADAM) optimization algorithm [79] based on the average gradient of overall loss function with respect to the network parameters for 64 randomly selected simulated AP traces (mini-batch = 64) at each training iteration (Eqs. [13][14][15].…”
Section: Long-short Term Memory (Lstm) Layers (Figure 3d)mentioning
The development of induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) has been a critical in vitro advance in the study of patient-specific physiology, pathophysiology and pharmacology. We designed a new deep learning multitask network approach intended to address the low throughput, high variability and immature phenotype of the iPSC-CM platform. The rationale for combining translation and classification tasks is because the most likely application of the deep learning technology we describe here is to translate iPSC-CMs following application of a perturbation. The deep learning network was trained using simulated action potential (AP) data and applied to classify cells into the drug-free and drugged categories and to predict the impact of electrophysiological perturbation across the continuum of aging from the immature iPSC-CMs to the adult ventricular myocytes. The phase of the AP extremely sensitive to perturbation due to a steep rise of the membrane resistance was found to contain the key information required for successful network multitasking. We also demonstrated successful translation of both experimental and simulated iPSC-CM AP data validating our network by prediction of experimental drug-induced effects on adult cardiomyocyte APs by the latter.
“…While in vitro iPSC-CM utilization allows for observation of a variety of responses to drugs and other perturbations [9][10][11][12], there is still a major inherent limitation: The complex differentiation process to create iPSC-CMs results in a model of cardiac electrical behavior, which is relatively immature, resembling fetal cardiomyocytes. Hallmarks of the immature phenotype include spontaneous beating, immature calcium handling, presence of developmental currents, and significant differences in the relative contributions of repolarizing potassium currents compared to adult ventricular myocyte [13][14][15].…”
Exciting developments in both in vitro and in silico technologies have led to new ways to identify patient specific cardiac mechanisms. The development of induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) has been a critical in vitro advance in the study of patient-specific physiology, pathophysiology and response to drugs. However, the iPSC-CM methodology is limited by the low throughput and high variability of resulting electrophysiological measurements. Moreover, the iPSC-CMs generate immature action potentials, and it is not clear if observations in the iPSC-CM model system can be confidently interpreted to reflect impact in human adults. There has been no demonstrated method to allow reliable translation of results from the iPSC-CM to a mature adult cardiac response. Here, we demonstrate a new computational approach intended to address the current shortcomings of the iPSC-CM platform by developing and deploying a multitask network that was trained and tested using simulated data and then applied to experimental data. We showed that a deep learning network can be applied to classify cells into the drugged and drug free categories and can be used to predict the impact of electrophysiological perturbation across the continuum of aging from the immature iPSC-CM action potential to the adult ventricular myocyte action potential. We validated the output of the model with experimental data. The method can be applied broadly across a spectrum of aging, but also to translate data between species.
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