Hetcrotrimeric guanine-nucleotide-binding regulatory proteins (G proteins) have been classified into several subtypes on the basis of the properties of their tl subunits, though a notable multiplicity of ;J subunits has also been demonstrated. To investigate whether each subtype of a subunit is associated with a particular y subunit, various oligomeric G proteins, purified from bovine tissues, were subjected to gel electrophoresis in a Tricine buffer system. All G proteins examined were shown to have more than two kinds of y subunit. Of the brain G proteins, G,A, GOB, and Cil contain the same set of three y subunits, but Gi2 contains only two or these subunits. Lung GiI and Giz and spleen Giz and Gi3 had similar sets of two y subunits, one of which was distinct from the y subunits of brain G proteins. These observations indicate that each subtype of a subunit is associated with a variety of By subunits, and that the combinations differ among cells. For analyses of the structural diversity of the y subunits, py subunits were purified from the total G proteins of each tissue and subjcctcd to reverse-phase HPLC under denaturing conditions, where none of the p subunits were eluted from the column. Three distinct y subunits were isolated in this way from brain p1) subunits. In contrast, lung and spleen subunits contained at least five y subunits, the elution positions and electrophoretic mobilities of which were indistinguishable between the two tissues. Among several y subunits, two subspecies appeared to be common to the three tissues. In fact, in each case; the partial amino acid sequence of the most abundant y subunit in each tissue was identical, and the sequences coincided exactly with that of 'y6' [Robishaw, J. D., Kalman, V. K., Moomaw, C. R. & Slaughter, C. A. (1 989) J . Riol. Chem. 264, IS 758 -15 7611. Fast-atom-bombardment mass spectrometry analysis indicated that this abundant 7 subunit in lung and spleen was geranylgeranylated and carboxymethylated at the C-terminus, as was 'ys' from brain. In addition to abundant y subunits, other tissue-specific y subunits were also shown to be geranylgeranylatcd by gas-chromatographycoupled mass spectrometry analysis of Raney nickel-treated 1' subunits. These results suggest that most y subunits associated with many different subtypes of ci subunit are geranylgeranylated in a variety of tissues, with the single exception being the retina where the G protein transducin has a farnesylated y subunit.