Carbonic anhydrases catalyze the reversible hydration of CO2 and are ubiquitous in highly evolved eukaryotes. The recent identification of a third class of carbonic anhydrase (␥ class) in a methanoarchaeon and our present finding that the  class also extends into thermophilic species from the Archaea domain led us to initiate a systematic search for these enzymes in metabolically and phylogenetically diverse prokaryotes. Here we show that carbonic anhydrase is widespread in the Archaea and Bacteria domains, and is an ancient enzyme. The occurrence in chemolithoautotrophic species occupying deep branches of the universal phylogenetic tree suggests a role for this enzyme in the proposed autotrophic origin of life. The presence of the  and ␥ classes in metabolically diverse species spanning the Archaea and Bacteria domains demonstrates that carbonic anhydrases have a far more extensive and fundamental role in prokaryotic biology than previously recognized.
Carbonic anhydrase is a zinc-containing enzyme catalyzing the reversible hydration of CO 2 [CO 2 ϩ H 2 O º HCO 3 Ϫ ϩ H ϩ ]. Since the discovery of the enzyme in bovine erythrocytes in 1933 (1), isozymes have been found in virtually all mammalian tissues and cell types, where they function in CO 2 transport and other physiological processes (2). Carbonic anhydrases are also abundant in plants and unicellular green algae, where they are essential for photosynthetic CO 2 fixation (3). Although they are ubiquitous in highly evolved organisms from the Eukarya, the extent to which carbonic anhydrases occur in the Archaea and Bacteria domains is unknown; the enzyme has been purified from only five prokaryotic species (4-8) since 1963, when it was first identified in Neisseria sicca (9).All carbonic anhydrases are divided into three distinct classes (␣, , and ␥) that evolved independently and have no sequence homology (10). Carbonic anhydrases from mammals (including the 10 active human isoforms) (10, 11), together with the two periplasmic enzymes from the unicellular green alga Chlamydomonas reinhardtii (12, 13), belong to the ␣ class. The  class is comprised of enzymes from the chloroplasts of both monocotyledonous and dicotyledonous plants (10). Within the Bacteria domain, the enzymes purified from Neisseria gonorrhoeae and Escherichia coli also belong to the ␣ and  classes (14, 15), respectively. Recently, a gene encoding a putative  type carbonic anhydrase in the methanoarchaeon Methanobacterium thermoautotrophicum was expressed in E. coli and found to encode a thermostable carbonic anhydrase (16). A carbonic anhydrase purified from the archaeon Methanosarcina thermophila is decidedly distinct from the ␣ and  classes, and is the prototype of a different class, the ␥ class (17).Our detection of documented  and ␥ carbonic anhydrases in the methanoarchaea prompted us to investigate the distribution of carbonic anhydrases in the Archaea and Bacteria domains. The results indicate not only that carbonic anhydrases are widely distributed in prokaryotes, but that th...