NODAL, a morphogen belonging to the transforming growth factor beta (TGFb) superfamily, is essential during embryogenesis where it induces axis formation and left-right asymmetry. NODAL is also required for the maintenance of human embryonic stem cell pluripotency, and emerges in many cancer types concomitant with metastasis and therapy resistance. Several enhancer elements have been shown to regulate mouse Nodal expression and studies have delineated mechanisms by which mRNA splicing and translation of NODAL homologues are regulated in model organisms.However, little is known regarding the co-transcriptional and post-transcriptional processing of human NODAL. Herein, we describe hitherto unreported RNAs which are transcribed from the NODAL locus, including an antisense transcript, a circular transcript, and multiple splice variants.These transcripts demonstrate the complexity of NODAL expression and highlight the need to consider each NODAL variant when attempting to quantify or target this morphogen.
Introduction:The transforming growth factor-beta (TGF-β) superfamily member nodal growth differentiation factor (human gene symbol: NODAL, NCBI gene ID: 4838) plays essential roles in early embryonic development and is reactivated in cancers. Nodal is aptly named after its discovery in the mouse node in gastrula-stage embryos 1 . Nodal has been well studied in numerous vertebrate embryos and in vitro models of early development 2-5 . These studies have shown that Nodal promotes epiblast expansion and maintenance in blastocyst stage embryos 6 , directs the specification of the distal visceral endoderm (DVE) after implantation 7 , establishes the proximaldistal 8 and anterior-posterior 8,9 axes, influences mesendoderm differentiation during gastrulation (reviewed in 5 ), and establishes left-right asymmetry 10 11-13 .Owing to practical and ethical limitations concerning research on human embryos, human-specific study of NODAL biology has generally been limited to cultured human embryonic stem (hES) cells where NODAL helps maintain pluripotency 14 , and blocks differentiation toward neuroectoderm lineages 15 . In addition, active SMAD2/3 downstream of NODAL (and other TGF-βs) also mediates cell fate decisions during mesendoderm differentiation [16][17][18][19] .NODAL expression in cancer was first identified by Postovit and Topczewska and colleagues in the aggressive C8161 human melanoma cell line 20 . These cells were able to induce ectopic outgrowths or a complete secondary axis after injection into zebrafish embryos at the blastocyst