Many bovine Staphylococcus aureus isolates from Argentina are nontypeable (NT), i.e., they do not produce serotype 5 or 8 capsular polysaccharides (CPs). Some of these NT strains have a deletion of the cap5(8) gene cluster mediated by a variant of IS257, now designated IScap. IScap showed 93% amino acid identity to S. aureus ORF49 but only 85% identity to IS431 from S. aureus N315 and 88% identity to an IS257-like element from bovine strain RF122. Thirty-six (53%) of 68 bovine isolates, drawn from a previously described S. aureus strain collection, carried some variant of IS257, including IScap. Of these 36 IS ؉ isolates, 6 were CP5 ؉ , 1 was CP8 ؉ , and 29 were NT. Forty-four of the 68 isolates were NT, and 24 of these 44 NT isolates (55%) exhibited IScap-mediated deletion of the cap5(8) gene cluster. IScap was not found among 20 human NT S. aureus isolates bearing the cap5HIJK genes, which suggests that IScap-mediated deletion of the capsule locus is restricted to bovine strains of S. aureus. We were unable to identify a precursor strain in which IScap flanked the cap5(8) capsule locus, nor were we able to select for deletion of the cap5(8) locus in vitro. Our results support the hypothesis that deletion of the cap5 locus occurred in the distant past and that the relative abundance of these NT strains may be a result of their ability to persist in subclinical mastitis infection in cows.Capsular polysaccharides of types 5 (CP5) and 8 (CP8) are produced by ϳ75 to 80% of Staphylococcus aureus isolates from humans and play a significant role in the pathogenesis of staphylococcal infections (9, 13, 18). Isolates of S. aureus that fail to produce CP5 or CP8 are defined as nontypeable (NT) and can be isolated from 20 to 25% of human infections (1,16,21,23). In contrast, the prevalence of NT strains among S. aureus strains isolated from bovines with mastitis varies considerably and is highly influenced by the geographic source of the strain (7,20,23,25). In Argentina, 86% of 195 bovine S. aureus isolates were reported to be NT (24). Our previous studies indicated that NT S. aureus isolates from humans carry either the cap5 or cap8 genetic locus and that most NT strains have point mutations in the cap5(8) promoter or in one of the 11 genes essential for capsule production (5). Other strains have mutations in genes that regulate capsule expression, such as agr or arlRS (5). NT strains of S. aureus from bovine mastitis in Argentina fail to produce capsular polysaccharides because they have point mutations in cap5(8) genes indispensable for capsule expression or because the cap5(8) locus is deleted. The cap5(8) locus was replaced by an IS element with 93% identity to IS257 in 13 of 21 epidemiologically unrelated NT bovine isolates (5). IS257 is a member of the IS6 family that was first found in Escherichia coli (2). Elements of the IS6 family with identical sequences have been found in several bacterial species (4), which suggests broad horizontal dissemination. IS257(also known as IS431) has been found in diverse genetic...