The aim of this study to inventory the main electrophoretic methods for identification and quantitative determination of fatty acids from different biological matrices. Critical analysis of electrophoretic methods reported in the literature show that the determination of polyunsaturated fatty acids can be made by: capillary zone electrophoresis, micellar electrokinetic chromatography and microemulsion electrokinetic chromatography using different detection systems such as ultraviolet diode array detection, laser induced fluorescence or mass -spectrometry. Capillary electrophoresis is a fast, low-cost technique used for polyunsaturated fatty acids analysis although their determination is mostly based on gas chromatography.Keywords: polyunsaturated fatty acids, capillary electrophoresis, omega 3 fatty acids Introduction Polyunsaturated fatty acids (PUFA) and especially the omega 3 fatty acids (FA) -eicosapentaenoic acid and docosahexaenoic acid and omega 6 FA -arachidonic acid present a special importance in physiological processes; fluidity of biological membranes is influenced by incorporating them into phospholipids structure.Due to the importance of FAs in different biochemistry and chemistry processes, elaboration of new methods of analysis for their determination represents a challenge and also a necessity for the analysts.The classical separation technique for FA analysis is the gas chromatography (GC)using flame ionization (FID) or mass spectrometry (MS) detectors. This FA methodology analysis involves firstly lipid fraction extraction, saponification reaction and then derivatization of the total FA content into fatty acid methyl esters (FAME) before injection in the GC equipment. Modern GC methods with high-quality capillary columns allow sensitive and reproducible FA analyses, as well as the characterization of complex mixtures of geometric isomers when combined with other chromatographic separations and spectroscopic identification. However GC analysis of FAshas its drawbacks related to the relatively long analysis times, the use of specialized expensive columns and to the necessity of precoloumn derivatization in order to improve volatility of the samples [1,2].Although GC is the predominant technique used for FAs analysis, high-performance liquid chromatography (HPLC) has also gained an important role in applications such as the handling of less usual samples, avoidance of degradation of heat-sensitive functional groups, and for micro-preparative purposes [3].