We develop an explicit theory of Kummer varieties associated to Jacobians of hyperelliptic curves of genus 3, over any field k of characteristic = 2. In particular, we provide explicit equations defining the Kummer variety K as a subvariety of P 7 , together with explicit polynomials giving the duplication map on K. A careful study of the degenerations of this map then forms the basis for the development of an explicit theory of heights on such Jacobians when k is a number field. We use this input to obtain a good bound on the difference between naive and canonical height, which is a necessary ingredient for the explicit determination of the Mordell-Weil group. We illustrate our results with two examples.