Candida phyllophila sp. nov. and Candida vitiphila sp. nov., two novel yeast species from grape phylloplane in Thailand

Kaewwichian, Rungluk

doi:10.2323/jgam.59.191

Cited by 6 publications

(6 citation statements)

References 21 publications

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“…Yurkov et al (2009) , identified yeasts isolated from soils and proposed a new member of the genus Clavispora , Clavispora reshetovae , based on its morphology and phylogenetic placement. In addition, due to an inability to form sexual spores, some yeast species that belong to the Clavispora clade as revealed by phylogenetic analysis based on DNA sequences were previously placed in the anamorphic genus Candida ( Lu et al, 2004 ; Jindamorakot et al, 2007 ; Nguyen et al, 2007 ; Rosa et al, 2007 ; James et al, 2009 ; Fell et al, 2011 ; Groenewald et al, 2011 ; Lachance et al, 2011 ; Nakase et al, 2011 ; Ribeiro et al, 2011 ; Limtong and Kaewwichian, 2013 ; Zhang et al, 2014 ). With the implementation of the “one fungus, one name” nomenclature, the relationships between Candida and Clavispora species began to be clarified ( Daniel et al, 2014 ; Kurtzman et al, 2018 ).…”

Section: Introductionmentioning

confidence: 99%

“…The habitats of species belonging to the Clavispora clade are very diverse and they have been found in plants ( Lu et al, 2004 ; Rosa et al, 2007 ; Groenewald et al, 2011 ; Lachance et al, 2011 ; Ribeiro et al, 2011 ; Limtong and Kaewwichian, 2013 ; Zhang et al, 2014 ; Drumonde-Neves et al, 2020 ), soil ( Yurkov et al, 2009 ; Nakase et al, 2011 ; Limtong and Kaewwichian, 2013 ), insects ( Nguyen et al, 2007 ; Lachance et al, 2011 ), insect frass ( Jindamorakot et al, 2007 ; Lachance et al, 2011 ; Nakase et al, 2011 ), fish ( Lachance et al, 2011 ), fresh water ( Fell et al, 2011 ), moss ( Lachance et al, 2011 ; Kaewwichian et al, 2019 ), and clinical samples ( Lachance and Phaff, 2011 ). Cl.…”

Section: Introductionmentioning

confidence: 99%

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Phylogenetic and genomic analyses of two new species of Clavispora (Metschnikowiaceae, Saccharomycetales) from Central China

et al. 2022

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Species in the genus Clavispora have previously been reported primarily in the northeast and northwest regions of China; the species diversity of Clavispora in central China is not currently clear. In this study, phylogenetic inferences of Clavispora based on sequences of a single-locus (LSU D1/D2) and a two-locus (LSU D1/D2 and ITS) were conducted. Two new species isolated from rotting wood in central China, namely Clavispora xylosa sp. nov. and Clavispora paralusitaniae sp. nov., were delimited and proposed based on morphological and molecular evidence. Cl. xylosa was closely related to C. thailandica CBS 10610T, but with 11.5% divergence in the LSU D1/D2 domains and 11.5% divergence in the ITS regions. Cl. paralusitaniae was a sister to Cl. lusitaniae CBS 6936T from which it differs with 4.7% divergence in the LSU D1/D2 domains and 5.4% divergence in the ITS regions. Description of Cl. xylosa sp. nov. and Cl. paralusitaniae sp. nov. was also supported by morphological comparisons and genomic analyses between the two new species and their closest relatives, C. thailandica CBS 10610T and Cl. lusitaniae CBS 6936T. These results indicate a potentially great diversity of Clavispora spp. inhabiting rotting wood in central China, ripe for future discovery.

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Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Phylogenetic and genomic analyses of two new species of Clavispora (Metschnikowiaceae, Saccharomycetales) from Central China

et al. 2022

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“…Moreover, the microbial communities of the phylloplane are dependent of several factors like environmental factors, leaf age, particular growing conditions of the plant, and on the type and density of competing microorganisms [3,6,7]. The phylloplane of plants is colonized by several yeasts of the phyla Ascomycota and Basidiomycota [8][9][10][11][12][13][14][15][16][17][18][19][20][21][22].…”

Section: Introductionmentioning

confidence: 99%

“…The phylloplane yeast community has been studied by both culture-dependent and culture-independent approaches. Recent studies addressed the topic of yeast diversity on the phylloplane of economically relevant crops and both culture-dependent and culture-independent approaches have been employed [13][14][15][16][17][18][19][20][21][22]. As observed for other microbes, the species composition of the yeast communities is not identical when the two approaches are compared or when culture-dependent approaches employ different yeast isolation techniques [16][17][18][19][20][21]23].…”

Section: Introductionmentioning

confidence: 99%

Yeast Diversity Associated with the Phylloplane of Corn Plants Cultivated in Thailand

et al. 2020

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The ecology and diversity of phylloplane yeasts is less well understood in tropical regions than in temperate ones. Therefore, we investigated the yeast diversity associated with the phylloplane of corn, an economically important crop in Thailand, by a culture-dependent method. Thirty-six leaf samples were collected and 217 yeast strains were isolated by plating leaf-washings. The strains were grouped by PCR-fingerprinting and representative strains were identified by analysis of the D1/D2 domain of the large subunit rRNA gene. In total, 212 strains were identified within 10 species in the Ascomycota and 32 species in the Basidiomycota. Five strains represented potential new species in the Basidiomycota, one strain was recently described as Papiliotrema plantarum, and four strains belonged to the genera Vishniacozyma and Rhodotorula. A higher number of strains in the Basidiomycota (81.6%) was obtained. Hannaella sinensis was the species with the highest occurrence. Principal coordinates analysis ordinations of yeast communities revealed that there were no differences in the similarity of the sampling sites. The estimation of the expected species richness showed that the observed species richness was lower than expected. This work indicated that a majority of yeast associated with the phylloplane of corn plant belongs to the phylum Basidiomycota.

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“…In Kurtzman (2011), Yamadazyma philogaea , the type species of the genus, as well as Y. akitaensis , Y. mexicana , Y. nakazawae , Y. scolyti , Y. triangularis and 28 Candida species are placed in the Yamadazyma clade. Since then, many novel species of the genus Candida in this clade have been described, for example Candida kanchanaburiensis , C. khao-thaluensis , C. vaughaniae , C. tallmaniae , C. oceani , C. sirachaensis , C. sakaeoensis , C. phyllophilla and C. vitiphila (Nakase et al , 2008; Burgaud et al , 2011; Groenewald et al , 2011; Limtong et al ., 2012; Limtong & Kaewwichian, 2013). Recently, five species of the genus Yamadazyma , namely Y. terventina , Y. siamensis , Y. phyllophila , Y. paraphyllophila and Y. ubonensis , were proposed from strains isolated in Italy, Taiwan and Thailand (Ciafardini et al ., 2013; Kaewwichian et al , 2013; Junyapate et al ., 2014).…”

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confidence: 99%

Yamadazyma insecticola f.a., sp. nov. and Yamadazyma epiphylla f.a., sp. nov., two novel yeast species

Jindamorakot

Am-In

Kaewwichian

2015

International Journal of Systematic and Evolutionary Microbiology

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Two yeast strains representing two novel yeast species were isolated from frass of an unidentified insect (ST-78 T) and the external surfaces of rice leaves (YE170 T) collected in Thailand. The two strains were genetically, morphologically and phenotypically distinct from recognized species and were found to represent two novel species of the genus Yamadazyma although formation of ascospores was not observed. In terms of pairwise sequence similarity of the D1/D2 region of the large subunit rRNA gene, the closest relative of strain ST-78 T was Candida lessepsii CBS 9941 T but with 3.8 % nucleotide substitutions, while the closest relative of strain YE170 T was strain ST-78 T but with 4.3 % nucleotide substitutions. Analysis of the sequences of the internal transcribed spacer 1 and 2 (ITS1-2) regions revealed that strain ST-78 differed from C. lessepsii CBS 9941 T by 8.8 % nucleotide substitutions and from strain YE170 T by 9.4 % nucleotide substitutions. The result of pairwise sequence similarity of the D1/D2 and ITS1-2 regions together with phylogenetic analysis indicated that strains ST-78 T and YE170 T represented two novel species within the Yamadazyma clade. The names Yamadazyma insecticola f.a., sp. nov. (type strain ST-78 T 5BCC 8314 T 5NBRC 110421 T 5CBS 13382 T ; MycoBank no. MB810546) and Yamadazyma epiphylla f.a., sp. nov. (type strain YE170 T 5BCC 63466 T 5NBRC 110423 T 5CBS 13384 T ; MycoBank no. MB810547) are proposed for the two novel yeast species.

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Candida phyllophila sp. nov. and Candida vitiphila sp. nov., two novel yeast species from grape phylloplane in Thailand

Cited by 6 publications

References 21 publications

Phylogenetic and genomic analyses of two new species of Clavispora (Metschnikowiaceae, Saccharomycetales) from Central China

Phylogenetic and genomic analyses of two new species of Clavispora (Metschnikowiaceae, Saccharomycetales) from Central China

Yeast Diversity Associated with the Phylloplane of Corn Plants Cultivated in Thailand

Yamadazyma insecticola f.a., sp. nov. and Yamadazyma epiphylla f.a., sp. nov., two novel yeast species

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