Exposure of DNA to free radicals and other electrophiles results in strand breaks, as well as modified nucleotides (lesions) within intact strands of the biopolymer. DNA lesions can be genotoxic and have been implicated in aging and diseases such as cancer. 1-3 OxodG and Fapy•dG are examples of lesions produced in significant yields from dG when DNA is exposed to oxidative stress. It is well-known that OxodG gives rise to G→T transversions. 1 Recent investigations suggest that Fapy•dG also has significant effects on repair and replication. 4 For instance, OxodG and Fapy•dG result in high levels of G→T transversions when they are replicated in simian kidney cells. 5 The former has been proposed as a biomarker when studying the effects of oxidative stress on DNA. 2 In addition, it has also been suggested that the ratio of OxodG:Fapy•dG may be characteristic of the cancerous state of a cell. 6 Currently, these lesions are detected and quantified via mass spectrometry following degradation of the DNA. 7,8 However, there is some disagreement regarding how these measurements are made. 9-11We describe a reagent and accompanying fluorescent detection method that enables one to selectively quantify OxodG and Fapy•dG.Selective DNA lesion detection is attractive because of its simplicity. One approach exploits a lesion's reactivity. 12-14 The facile oxidation of OxodG and nucleophilic trapping of its oxidized product(s) by molecules such as spermine provided inspiration for developing a system for detecting it and Fapy•dG. 15 OxodG (∼0.75 V, NHE) is more readily oxidized than the most readily oxidized native nucleotide, dG (1.29 V, NHE). The irreversible oxidation of 1 (1.08 V, NHE) was determined to be more favorable than that of dG, suggesting that using a similar oxidation/trapping approach for detecting Fapy•dG was plausible. 16 E-mail: mgreenberg@jhu.edu Supporting Information Available: Procedures for synthesis and characterization of all molecules, and all other experiments. ESI-MS and MALDI-TOF MS from experiments described herein. This material is available free of charge via the Internet at http://pubs.acs.org. A carboxylated derivative of spermine was used as a precursor to 2. 16,17 The spermine derivative (2) provides a means for tagging the oxidized species derived from OxodG and Fapy•dG with biotin, which is used for quantifying the lesions. Slower moving adducts were detected in good yield when duplex DNA (3 and 4) was reacted with Na 2 IrCl 6 in the presence of 2 at 25 °C for 1 h (Figures 1 and 2). 15 Minor amounts of a product that migrated even more slowly were also detected. Reaction of OxodG with spermine and other diamines under oxidative conditions is well-established. 15 Confirmation that adducts corresponded to 1:1 adducts between 2 and oxidized OxodG or Fapy•dG was obtained using MALDI-TOF MS. 16 Additional evidence that adduct formation occurred at Fapy•dG in 4 was obtained by ESI-MS following reaction of 1 and 2 under the same reaction conditions. 16
NIH Public AccessAlthough the yields of adduct...