CamPype: an open-source workflow for automated bacterial whole-genome sequencing analysis focused on Campylobacter
Irene Ortega-Sanz,
José A. Barbero-Aparicio,
Antonio Canepa-Oneto
et al.
Abstract:Background
The rapid expansion of Whole-Genome Sequencing has revolutionized the fields of clinical and food microbiology. However, its implementation as a routine laboratory technique remains challenging due to the growth of data at a faster rate than can be effectively analyzed and critical gaps in bioinformatics knowledge.
Results
To address both issues, CamPype was developed as a new bioinformatics workflow for the genomics analysis of sequenci… Show more
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