words)The Parkinson´s disease (PD)-associated kinase Leucine-Rich Repeat Kinase 2 (LRRK2) is a potent modulator of autophagy and impacts on lysosome biology and function, but unclarity exists on the precise mechanics of its role and the direction of this modulation. LRRK2 is also involved in the degradation of pathological alpha-synuclein, with pathogenic mutations precipitating neuropathology in cellular and animal models of PD, and most LRRK2 familial cases manifesting with Lewy neuropathology. Defects in autophagic processing and lysosomal degradation of alpha-synuclein have been postulated to underlie its accumulation and onset of neuropathology. Thus, it is critical to reconcile these independent pieces of information to obtain a comprehensive knowledge on LRRK2-associated pathology that could also be generalized to the idiopathic disease. Here, we report a focused investigation on the role of PD-causing G2019S-LRRK2 in the autophagy-lysosome pathway in a recombinant cell line model. Initially, we evaluated the effect of LRRK2 expression on autophagy-related transcriptome. Then, we found that G2019S-LRRK2 leads to accumulation of autophagosomes with no net effect on autophagy induction. This is linked to abnormalities in lysosome morphology and proteolytic activity that are associated with a decrease in the successful formation of autolysosomes. Despite some of these features being shared by WT-LRRK2, alpha-synuclein intracellular inclusions are specifically found in G2019S-LRRK2 cells. Pharmacological kinase inhibition is capable of rescuing defects in the autophagy-lysosome pathway and reducing the number of inclusions. Notably, this effect is prevented by upstream blockade of autophagosome-lysosome fusion events, highlighting this step of the process as critical for alpha-synuclein clearance. Mutations in the Lrrk2 gene cause late-onset, familial Parkinson´s disease (PD) with variable penetrance that is clinically indistinguishable from idiopathic PD (iPD) but with pleomorphic pathology 1 . However, the G2019S mutation is singularly the most common genetic cause of PD worldwide, with an incidence up to 40% in specific populations 2,3 , and mostly presents with alpha-synuclein (aSyn) Lewy neuropathology at autopsy 4 . The gene codes for Leucine-Rich Repeat Kinase 2 (LRRK2), a large multidomain protein with two distinct enzymatic domains (GTPase and kinase) in close vicinity to each other 5 . The PDlinked mutations reside in this enzymatic core with G2019S located in the kinase domain and reported to increase kinase activity 6 . The cellular roles impacted by LRRK2 are varied, with stronger consensus on synaptic transmission 7 , vesicle trafficking 8 and autophagy 9 . Interestingly, these pathways might converge in neuronal biology and function 10 . Several independent investigations demonstrated that LRRK2 acts at different stages of the autophagy-lysosome pathway, with some conflicting results on the direction of this modulation 9 . Indications include a kinase-dependent role of LRRK2 in the modulation of...