Abstract:Cadmium chemistry is an important area of research from both an industrial and environmental point of view. This review surveys the structural determination of over six hundred complexes of cadmium. The coordination numbers observed range from two to eight with six occuring most frequently, and lower values mostly associated with carbon donor ligands. The most common donor atoms in the higher coordination number complexes are Ν, Ο and CI. A range of derivatives from dimers to polymers contain two or more cadmi… Show more
“…Even if Cd has been shown to occur in 2-, 3-, 4-, 5-, 6-, 7-, or 8-coordination in low molecular weight organic molecules, 6-and 4-coordination geometries predominate. Cadmium bonded to O is usually 6-coordinated, and Cd bonded to S is usually 4-coordinated (28). In Table 3 literature data on Cd distances in 4-and 6-coordinated compounds are presented.…”
Section: Resultsmentioning
confidence: 99%
“…Above the absorption edge a cubic spline fit was used to remove the background, and the data were k 3 -weighted to enhance the higher k values. Data were fitted by theoretical EXAFS amplitudes and phase functions of mixed models for Cd-S, Cd-O, and Cd-C bonding, on the basis of structural parameters from well-defined organic and inorganic com-pounds (28)(29)(30), and generated by FEFF 7.0 (31). The fitting was done in two steps: (1) After isolation of the first major peak (0.4-2.38 Å) in R-space (Fourier transforms), data backfiltered to k-space were used to determine bond distances (R) for the contribution of O/N and S atoms in the first coordination shell.…”
Section: Ion Activity Measurements With An Ion-selective Electrode (Ise)mentioning
It is widely accepted that the bioavailability, toxicity, and mobility of trace metals are highly dependent on complexation reactions with functional groups in natural organic matter (NOM). In this study, the coordination chemistry of Cd in NOM was investigated by extended X-ray absorption fine structure spectroscopy. Soil organic matter (SOM) from different types of organic soils and dissolved organic matter (DOM) from an organic and a mineral soil horizon of a Spodosol and aquatic DOM from Suwannee River were investigated. In SOM samples (1000-25000 microg of Cd g(-1), pH 4.6-6.6), Cd was coordinated by 1.0-2.5 S atoms at a distance of 2.49-2.55 A and by 3.0-4.5 O/N atoms at a distance of 2.22-2.25 A. In DOM samples (1750-4250 microg of Cd g(-1), pH 5.4-6.3), Cd was coordinated by 0.3-1.8 S atoms at a distance of 2.51-2.56 A and 3.6-4.5 O/N atoms at a distance of 2.23-2.26 A. In both SOM and DOM samples a second coordination shell of 1.7-6.0 carbon atoms was found at an average distance of 3.12 A. This is direct evidence for inner-sphere complexation of Cd by functional groups in NOM. Furthermore, ion activity measurements showed that less than 1% of total Cd was in the form of free Cd2+ in our samples. Bond distances and coordination numbers suggest that Cd complexed in SOM and DOM is a mixture of a 4-coordination with S (thiols) and 4- and 6-coordinations with O/N ligands. Given that Cd-S associations on average are stronger than Cd-O/N associations, our results strongly indicate that reduced S ligands are involved in the complexation of Cd by NOM also at native concentrations of metal in oxidized organic-rich soils and in humic streams.
“…Even if Cd has been shown to occur in 2-, 3-, 4-, 5-, 6-, 7-, or 8-coordination in low molecular weight organic molecules, 6-and 4-coordination geometries predominate. Cadmium bonded to O is usually 6-coordinated, and Cd bonded to S is usually 4-coordinated (28). In Table 3 literature data on Cd distances in 4-and 6-coordinated compounds are presented.…”
Section: Resultsmentioning
confidence: 99%
“…Above the absorption edge a cubic spline fit was used to remove the background, and the data were k 3 -weighted to enhance the higher k values. Data were fitted by theoretical EXAFS amplitudes and phase functions of mixed models for Cd-S, Cd-O, and Cd-C bonding, on the basis of structural parameters from well-defined organic and inorganic com-pounds (28)(29)(30), and generated by FEFF 7.0 (31). The fitting was done in two steps: (1) After isolation of the first major peak (0.4-2.38 Å) in R-space (Fourier transforms), data backfiltered to k-space were used to determine bond distances (R) for the contribution of O/N and S atoms in the first coordination shell.…”
Section: Ion Activity Measurements With An Ion-selective Electrode (Ise)mentioning
It is widely accepted that the bioavailability, toxicity, and mobility of trace metals are highly dependent on complexation reactions with functional groups in natural organic matter (NOM). In this study, the coordination chemistry of Cd in NOM was investigated by extended X-ray absorption fine structure spectroscopy. Soil organic matter (SOM) from different types of organic soils and dissolved organic matter (DOM) from an organic and a mineral soil horizon of a Spodosol and aquatic DOM from Suwannee River were investigated. In SOM samples (1000-25000 microg of Cd g(-1), pH 4.6-6.6), Cd was coordinated by 1.0-2.5 S atoms at a distance of 2.49-2.55 A and by 3.0-4.5 O/N atoms at a distance of 2.22-2.25 A. In DOM samples (1750-4250 microg of Cd g(-1), pH 5.4-6.3), Cd was coordinated by 0.3-1.8 S atoms at a distance of 2.51-2.56 A and 3.6-4.5 O/N atoms at a distance of 2.23-2.26 A. In both SOM and DOM samples a second coordination shell of 1.7-6.0 carbon atoms was found at an average distance of 3.12 A. This is direct evidence for inner-sphere complexation of Cd by functional groups in NOM. Furthermore, ion activity measurements showed that less than 1% of total Cd was in the form of free Cd2+ in our samples. Bond distances and coordination numbers suggest that Cd complexed in SOM and DOM is a mixture of a 4-coordination with S (thiols) and 4- and 6-coordinations with O/N ligands. Given that Cd-S associations on average are stronger than Cd-O/N associations, our results strongly indicate that reduced S ligands are involved in the complexation of Cd by NOM also at native concentrations of metal in oxidized organic-rich soils and in humic streams.
“…Calcium is a poor activator of MntR because it has low affinity for the A site, and zinc is unable to activate MntR because it fails to adopt the correct coordination geometry in that site. It is risky to extend these observations to other metal ions, since additional factors may come into play, but it is worth re-emphasizing that, among the divalent first row transition metal ions in octahedral environments, high spin Mn 2+ has the largest ionic radius (38), and Mn 2+ is unusually flexible with respect to its coordination geometry (51). Thus, the selectivity of MntR for Mn 2+ over Fe 2+ as observed in vivo and in vitro (8,15,17), may be based on the geometry and size in the metal-binding sites.…”
Section: Discussionmentioning
confidence: 99%
“…ascribed to the overall size of these sites and the capacity of d 10 Cd 2+ to adopt a variety of geometries (51).…”
The manganese transport regulator (MntR) of Bacillus subtilis is activated by Mn(2+) to repress transcription of genes encoding transporters involved in the uptake of manganese. MntR is also strongly activated by cadmium, both in vivo and in vitro, but it is poorly activated by other metal cations, including calcium and zinc. The previously published MntR.Mn(2+) structure revealed a binuclear complex of manganese ions with a metal-metal separation of 3.3 A (herein designated the AB conformer). Analysis of four additional crystal forms of MntR.Mn(2+) reveals that the AB conformer is only observed in monoclinic crystals at 100 K, suggesting that this conformation may be stabilized by crystal packing forces. In contrast, monoclinic crystals analyzed at room temperature (at either pH 6.5 or pH 8.5), and a second hexagonal crystal form (analyzed at 100 K), all reveal the shift of one manganese ion by 2.5 A, thereby leading to a newly identified conformation (the AC conformer) with an internuclear distance of 4.4 A. Significantly, the cadmium and calcium complexes of MntR also contain binuclear complexes with a 4.4 A internuclear separation. In contrast, the zinc complex of MntR contains only one metal ion per subunit, in the A site. Isothermal titration calorimetry confirms the stoichiometry of Mn(2+), Cd(2+), and Zn(2+) binding to MntR. We propose that the specificity of MntR activation is tied to productive binding of metal ions at two sites; the A site appears to act as a selectivity filter, determining whether the B or C site will be occupied and thereby fully activate MntR.
“…The average coordination numbers (CN) for the preMD, LowEMD, and postMD Kln–Cd models were 6.0 (±0.0), 5.3 (±1.2), and 5.0 (±0.0), respectively. In general, Cd 2+ in aqueous solutions and as a hydrated surface complex is assumed to be hexacoordinated. − Among a wide range of inorganic and organometallic Cd compounds, CN 6 is the most common geometry followed by CN 4, with five-coordinated compounds being relatively rare; however, distortion of the CN 6-coordinating environment around Cd is common. In the experimental XAFS analysis of Vasconcelos et al assuming one shell of O atoms, they reported an average N of 4.9 ± 0.3 Cd atoms for sorption spectra at pH 8 and 9 for different fit models, whereas one spectrum at pH 7 was fit with 5.9 ± 0.2 Cd atoms.…”
Due to the potential toxicity of cadmium (Cd 2+ ) and its presence in various waste products found in the environment, it is necessary to develop methods to attenuate and remediate Cd 2+ waste. Sorption of Cd 2+ to mineral surfaces is a potential route to accomplish this goal. This work focused on improving our molecular-scale understanding of the chemistry of Cd 2+ interactions with gibbsite and kaolinite mineral surfaces. Plane-wave density functional theory (DFT) energy minimization calculations and molecular dynamics simulations were used to study the adsorption energies and the nature of the bonds between Cd 2+ and the mineral surfaces for possible inner-and outer-sphere surface complexes. Models resulting from the DFT calculations were used to calculate theoretical XANES spectra that were compared with experimental Cd L III XANES of aqueous Cd 2+ as a proxy for outer-sphere Cd 2+ hydrated complexes associated with the mineral surfaces. These studies suggest that Cd 2+ would favorably bond to the (100) surfaces of both kaolinite and gibbsite through a bidentate mononuclear interaction. However, the results indicate that mixtures of surface complexes on these minerals are likely.
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