The pores of voltage-gated ion channels are lined by protein loops that determine selectivity and conductance. The relative orientations of these "P" loops remain uncertain, as do the distances between them. Using sitedirected mutagenesis, we introduced pairs of cysteines into the P loops of ,ul rat skeletal muscle sodium channels and sought functional evidence of proximity between the substituted residues. Only cysteinyl residues that are in close proximity can form disulfide bonds or metal-chelating sites. The mutant Y401C (domain I) spontaneously formed a disulfide bond when paired with E758C in the P loop of domain II; the same residue, when coupled with G1530C in domain IV, created a high-affinity binding site for Cd2+ ions. The results provide the first specific constraints for intramolecular dimensions of the sodium channel pore.The voltage-dependent sodium channel, a protein that underlies excitability in muscle and nerve, is specialized to transport Na+ ions selectively and at high rates (1). This distinctive behavior is imparted by loops that line the channel pore, with one "P" loop being contributed by each of four domains within the a subunit (2). Mutagenesis has pinpointed a number of individual residues that are important determinants of pore properties (3-8). Nevertheless, little is known about the tertiary structure of the pore. Molecular dimensions remain unclear, and the relative orientations of the four P loops are indeterminate. We have introduced pairs of cysteines into the pore to identify residues capable of close-range interactions, as revealed by their ability to form disulfide bonds and high-affinity metal-binding sites. In the gl rat skeletal muscle channel, the first domain mutation Y401C was paired with cysteine mutations in each of the three other P loops. Two remarkable pairings were identified: Y401C+G1530C (spanning domains I and IV) created a high-affinity binding site for cadmium ions, while Y401C+E758C (domains I and II) spontaneously formed an intramolecular disulfide bridge. These residues must be very close to each other within the channel. This generalizable approach can provide unique insights into the threedimensional structure of functional, intact biological proteins.
MATERIALS AND METHODSCysteine mutants were made in the Na+ channel a subunit (9) by oligonucleotide-directed mutagenesis and were expressed in Xenopus laevis oocytes as described (8). Whole-cell currents were recorded 2-5 days after injection with a twomicroelectrode voltage clamp at 20 + 2°C. Currents were elicited by 50-ms test pulses from -70 to 20 mV in 5-mV increments from a holding potential of -100 mV, applied every 2 s. The currents were normalized to the maximum current (Imax,) recorded in control solution (ND-96) containing 96 mM NaCl, 2 mM KCl, 1 mM MgCl2, and 5 mM HEPES (pH 7.6). The normalized currents were fitted to a transform of the, where V is the test potential, and the parameters estimated by fit are Vrev, the reversal potential; Gmax, the relative maximal conductance, VO.5, the...