We describe a method for microscopic identification of DNA-synthesizing cells in bacterioplankton samples. After incubation with the halogenated thymidine analogue bromodeoxyuridine (BrdU), environmental bacteria were identified by fluorescence in situ hybridization (FISH) with horseradish peroxidase (HRP)-linked oligonucleotide probes. Tyramide signal amplification was used to preserve the FISH staining during the subsequent immunocytochemical detection of BrdU incorporation. DNA-synthesizing cells were visualized by means of an HRP-labeled antibody Fab fragment and a second tyramide signal amplification step. We applied our protocol to samples of prefiltered (pore size, 1.2 m) North Sea surface water collected during early autumn. After 4 h of incubation, BrdU incorporation was detected in 3% of all bacterial cells. Within 20 h the detectable DNA-synthesizing fraction increased to >14%. During this period, the cell numbers of members of the Roseobacter lineage remained constant, but the fraction of BrdU-incorporating Roseobacter sp. cells doubled, from 24 to 42%. In Alteromonas sp. high BrdU labeling rates after 4 to 8 h were followed by a 10-fold increase in abundance. Rapid BrdU incorporation was also observed in members of the SAR86 lineage. After 4 h of incubation, cells affiliated with this clade constituted 8% of the total bacteria but almost 50% of the visibly DNA-synthesizing bacterial fraction. Thus, this clade might be an important contributor to total bacterioplankton activity in coastal North Sea water during periods of low phytoplankton primary production. The small size and low ribosome content of SAR86 cells are probably not indications of inactivity or dormancy.As awareness of the importance, diversity, and complexity of marine microbial communities develops, it is increasingly recognized that an understanding of the ecology of the various bacterial (and archaeal) populations requires simultaneous information about both the identity and the activity of individual cells in environmental samples (8,27,49). Consequently, a considerable amount of recent research effort has focused on the development of techniques that permit estimation of various activities of single bacterial cells (16,35). In addition, cultivation-independent approaches have been developed for quantification of the sizes of populations of individual bacterial taxa, such as fluorescence in situ hybridization (FISH) with oligonucleotide or polynucleotide rRNA-targeted probes (1,9,10,17). FISH is an increasingly popular tool for microscopic visualization of individual groups of bacteria and archaea in the marine environment (7,9,14,22,29,31). Furthermore, recent technical advances have greatly increased the sensitivity of this staining technique (9, 29, 30), so that the low ribosome content of many planktonic bacteria no longer limits the applicability of FISH to productive or coastal regions (30). One of the challenges of present-day microbial ecology is to combine FISH with techniques that allow researchers to determine defined mi...