Bounding reproductive rates in state‐space models for animal population dynamics

Abstract

Citation: Sk€ old, M., and J. Knape. 2018. Bounding reproductive rates in state-space models for animal population dynamics. Ecosphere 9(5):e02215. 10.1002/ecs2.2215Abstract. Time-series models applied in the study of animal population dynamics commonly assume linearity on the log-scale, leading to log-normally distributed rates of increase. While this is often computationally convenient, in particular when performing statistical inference in the presence of observation error, it may lead to unrealistic predictions for animals with a limited reproduction. We introduce a model that includes an explicit bound on the reproductive rate of an individual, and apply this to a population time series of ungulates in Kruger National Park, South Africa. Due to observational error, the year-to-year increases in animal counts occasionally exceeded the maximal reproductive rate of the animals. In such cases, the traditional unbounded model showed a tendency of overfitting data, leading to unrealistic predictions of the underlying population increase. An observed increase above the maximal reproductive rate also provides empirical confirmation that observation error exists. The model with an explicit bound was able to utilize this in order to separate observational error from population process noise, which the traditional unbounded model was unable to do. We conclude that enforcing a strict upper bound on the reproductive rate of an animal population model may lead to more realistic statistical inference than commonly applied log-linear models when an explicit bound on reproductive rate is known. We further conclude that introducing a bound on reproduction can greatly assist in separating observational error and population process noise for slow life histories, or more generally, when the rate of sampling is high compared to reproductive rates.

Life-history traits inform on population trends when assessing the conservation status of a declining tiger shark population

“…The method may help to overcome some of biases that come from 349 analysing abundance indices with purely descriptive statistical models (Maunder et al 350 2006). For instance, models that limit population growth by life-history parameters can 351 overcome biased trends that resulted from change in detection probability of cryptic 352 species (Sköld & Knape 2018). The results for the three generation decline were similar for 353 all priors, so long as all sites were included in the analysis.…”