BLAST Application on the GPE/UnicoreGS Grid

Borcz, Marcelina; Kluszczyński, Rafał; Bała, Piotr

doi:10.1007/978-3-540-72337-0_24

Cited by 3 publications

(2 citation statements)

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“…In the last years, authors have developed gridbeans for bioinformatics tools like BLAST, NAMD or Clustal (Borcz et al, 2007;Kluszczyński and Bała, 2008;Kluszczyński and Bała, 2009). All mentioned gridbeans provide a graphical interface which makes possible to run the applications in an easy way.…”

Section: Application Gridbeansmentioning

confidence: 99%

“…Applications such as BLAST (Basic Local Alignment Search Tool), Clustal and NAMD (Not Another Molecular Dynamics) are widely used by the molecular biology scientists. Authors successfully supported them on the UNICORE Grid (Borcz et al, 2007;Kluszczyński and Bała, 2008;Kluszczyński and Bała, 2009). However, there has been noticed the need for the statistical tools to analyze data.…”

Section: Introductionmentioning

confidence: 99%

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Statistical Analysis of Biomolecular Data Using Unicore Workflows

Borcz

Kluszczyński

Bała

2010

Proceedings of the First International Conference on Bioinformatics

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Nowadays the role of e-Science is important, especially in the area of life sciences. Experiments and their analysis are carried out in collaboration of many scientific groups from institutes located all over the world. Moreover, they work with immense amount of data which usually needs to be processed statistically. Therefore, the need for computing power is increasing. It usually can not be supplied by a standard laboratory. That is why e-Science makes use of grid technology. UNICORE (Uniform Interface to Computing Resources) is a middleware enabling access to the Grid resources in a seamless and secure way. In this paper we present UNICORE gridbean for statistical R environment which enables to process statistically data on the Grid. Being used as a part of more complex workflow task it can analyze results given by another applications and calculate needed statistics. By presenting example workflow constructed in UNICORE Rich Client application, authors show power of the Chemomentum workbench built on UNICORE Grid system.

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Section: Application Gridbeansmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%