Using the nitroimidazopyran-based antituberculosis drug PA-824 as a selective agent, transposon-generated Mycobacterium bovis strain BCG (M. bovis) mutants that could not make coenzyme F 420 were identified. Four independent mutants that could not make F 420 or the biosynthesis intermediate FO were examined more closely. These mutants contained transposons inserted in the M. bovis homologue of the Mycobacterium tuberculosis gene Rv1173, which we have named fbiC. Complementation of an M. bovis FbiC ؊ mutant with fbiC restored the F 420 phenotype. These data demonstrate that fbiC is essential for F 420 production and that FbiC participates in a portion of the F 420 biosynthetic pathway between pyrimidinedione and FO. Homologues of fbiC were found in all 11 microorganisms that have been fully sequenced and that are known to make F 420 . Four of these homologues (all from members of the aerobic actinomycetes) coded for proteins homologous over the entire length of the M. bovis FbiC, but in seven microorganisms two separate genes were found to code for proteins homologous with either the N-terminal or C-terminal portions of the M. bovis FbiC. Histidine-tagged FbiC overexpressed in Escherichia coli produced a fusion protein of the molecular mass predicted from the M. bovis BCG sequence (ϳ95,000 Da), as well as three other histidine-tagged proteins of significantly smaller size, which are thought to be proteolysis products of the FbiC fusion protein.The structure of coenzyme F 420 (a 7,8-didemethyl-8-hydroxy 5-deazaflavin electron transfer agent that is present in few microorganisms) was first determined in studies with the methanogenic Archaea (13,14). This coenzyme had been previously purified from a methanogen, and its spectral and fluorescence properties were described in detail by Cheeseman et al. (6), who gave it its name (for a factor that absorbed maximally in visible wavelengths at 420 nm). However, an earlier report by Cousins described a yellow compound of unknown structure from Mycobacterium smegmatis that, based on its UV-visible spectrum, was almost certainly F 420 (11). Naraoka et al. reported that F 420 was present in Mycobacterium avium (37), and it was subsequently discovered that F 420 was present in Mycobacterium tuberculosis (12) and all other mycobacteria examined (2, 43). Methanobacterium thermoautotrophicum F 420 contains two glutamyl residues (14), but Mycobacterium species contain primarily five-and six-glutamyl forms of F 420 (F 420 -5 and F 420 -6) (2). The structure of F 420 -5 is shown in Fig. 1A.In Mycobacterium and Nocardia species, F 420 is used by F 420 -dependent glucose-6-phosphate dehydrogenase (42,43) and is required for activation of the experimental antituberculosis drug PA-824 by M. tuberculosis and Mycobacterium bovis strain BCG (hereafter referred to as M. bovis) (48). It is likely that other F 420 -dependent reactions will be discovered in mycobacteria, since genes corresponding to several proteins with homology to F 420 -dependent enzymes from other organisms are present in...