Frequent exposure of terrestrial insects to temperature variation has led to the evolution of protective biochemical and physiological mechanisms, such as the heat shock response, which markedly increases the tolerance to heat stress. Insight into such mechanisms has, so far, mainly relied on selective studies of specific compounds or characteristics or studies at the genomic or proteomic levels. In the present study, we have used untargeted NMR metabolomic profiling to examine the biological response to heat stress in Drosophila melanogaster. The metabolite profile was analyzed during recovery after exposure to different thermal stress treatments and compared with untreated controls. Both moderate and severe heat stress gave clear effects on the metabolite profiles. The profiles clearly demonstrated that hardening by moderate heat stress led to a faster reestablishment of metabolite homeostasis after subsequent heat stress. Several metabolites were identified as responsive to heat stress and could be related to known physiological and biochemical responses. The time course of the recovery of metabolite homeostasis mirrored general changes in gene expression, showing that recovery follows the same temporal pattern at these two biological levels. Finally, our data show that heat hardening permits a quicker return to homeostasis, rather than a reduction of the acute metabolic perturbation and that the reestablishment of homeostasis is important for obtaining maximal heat-hardening effect. The results display the power of NMR metabolomic profiling for characterization of the instantaneous physiological condition, enabling direct visualization of the perturbation of and return to homeostasis. metabolomics; heat shock protein; nuclear magnetic resonance spectroscopy; insect ECTOTHERMIC ANIMALS EXPERIENCE fluctuating temperatures on both a daily and seasonal scale. In some cases, these fluctuations may become severely stressful or even lethal, and so these animals possess a number of physiological, biochemical, or behavioral adaptations that allow them to overcome such stressful situations. For instance, the fruitfly (Drosophila melanogaster) has the capacity to survive transient exposures to temperatures ranging from less than Ϫ10°C to above 40°C, and hence this species has been widely used as a model to investigate different aspects of the temperature stress response (21).Physiological stress can have effects on many biological levels. Because metabolites are downstream of both gene transcripts and proteins, changes in metabolite levels can provide an indication of the overall integrated response of an organism. To obtain a better understanding of the effects of heat stress on metabolite concentrations, it is relevant to adopt an integrative approach, such as simultaneous measurement of the response to stress situations of all metabolites present (above a concentration threshold) in the organism, e.g., by NMR spectroscopy. This approach, termed metabolomics, is a holistic approach complementary to genomics and prote...