We have characterized a xanthophyll binding site, called V1, in the major light harvesting complex of photosystem II, distinct from the three tightly binding sites previously described as L1, L2, and N1. Xanthophyll binding to the V1 site can be preserved upon solubilization of the chloroplast membranes with the mild detergent dodecyl-␣-D-maltoside, while an IEF purification step completely removes the ligand. Surprisingly, spectroscopic analysis showed that when bound in this site, xanthophylls are unable to transfer absorbed light energy to chlorophyll a. Pigments bound to sites L1, L2, and N1, in contrast, readily transfer energy to chlorophyll a. This result suggests that this binding site is not directly involved in light harvesting function. When violaxanthin, which in normal conditions is the main carotenoid in this site, is depleted by the de-epoxidation in strong light, the site binds other xanthophyll species, including newly synthesized zeaxanthin, which does not induce detectable changes in the properties of the complex. It is proposed that this xanthophyll binding site represents a reservoir of readily available violaxanthin for the operation of the xanthophyll cycle in excess light conditions.Light energy for higher plant photosynthesis is harvested by pigments including chlorophyll (Chl) 1 a, Chl b, and carotenoids bound to pigment binding proteins embedded into the thylakoid membrane. Each photosystem is made of two moieties: the core complex, containing Chl a and -carotene bound to plastidencoded polypeptides, and the light harvesting system, made up of nuclear encoded proteins of the Lhc family which, besides Chl a, also bind Chl b and the three xanthophylls lutein, violaxanthin, and neoxanthin. LHCII is by far the major antenna complex, since it binds about 50% of total chlorophyll. It is composed of heterotrimeric complexes of the Lhcb1, -2, and -3 gene products (1). Electron crystallography and mutation analysis showed that each Lhcb1 subunit contains five Chl a and four Chl b binding sites, while three additional sites can bind either Chl a or Chl b. Chlorophyll ligands are amino acid side chains belonging to three trans-membrane ␣-helices or to neighbor Chl (2, 3) through coordination of the Mg 2ϩ atom at the center of each porphyrin. Within the pigment-protein complex are also located two carotenoid binding sites, called L1 and L2, cross-bracing helices A and B. These sites are occupied by lutein (L1) and by lutein (80%) and violaxanthin (20%) (L2) (4, 5). A third carotenoid binding site (N1), highly specific for neoxanthin, was localized in the C helix domain (6). Xanthophylls in sites L1, L2, and N1, are tightly bound to the complex even in very harsh conditions of purification. In addition, violaxanthin can be bound to LHCII when isolated by mild detergent treatment, while the interaction does not survive further purification steps, such as IEF, suggesting loose binding (7,8).Besides their role in light harvesting, xanthophylls are also involved in photoprotection by quenching 3 Chl...