Biochemical Polymorphism and Intraspecific Structure in Populations of Kilka Clupeonella cultriventris (Nordmann, 1840) from Natural and Invasive Parts of Its Range

Karabanov, D. P.; Kodukhova, Yu. V.

doi:10.1134/s1995082918040107

Cited by 6 publications

(6 citation statements)

References 13 publications

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“…These two morphologically similar species are successfully separated based on all loci. But in the general population of C. cultriventris, some genetic differentiation is also observed [100].…”

Section: Dna Manipulation Amplification and Sequencingmentioning

confidence: 98%

Universal Set of Primers for DNA Identification of Alien Fish Species in Central Russia (Volga-Kama Region)

Karabanov¹,

Ei²,

Dd³

et al. 2021

Preprint

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Reliable species identification is critical for detection and monitoring of biological invasions. In this study, we propose four sets of primers for efficient amplification of several loci, including the mitochondrial cytochrome oxidase-c (COI) subunit I gene which is a basis for DNA barcoding. This set of primers gives a shorter product which can be used in high-throughput sequencing systems for metabarcoding purposes. Another mitochondrial locus encoding the large ribosomal subunit (16S) may be useful to study the population structure and as an additional source of information in the metabarcoding of communities. We propose to use a set of primers for the nuclear locus of the small ribosomal subunit (18S) as a positive control and to verify the results of the barcoding. Our proposed sets of primers demonstrate a high amplification efficiency and a high specificity both for freshwater alien and indigenous fishes. The proposed research design makes it possible to carry out extremely cheap studies on the assessment of biological diversity using genetic analysis without expensive equipment, and with the technique for conducting laboratory work and processing of the results available to any researcher. The paper also presents original data on the genetic polymorphism of all mass alien fish species in the Volga-Kama region. High efficiency of DNA identification based on our primers is shown as compared to traditional monitoring of biological invasions.

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Section: Dna Manipulation Amplification and Sequencingmentioning

confidence: 98%

Universal Set of Primers for DNA Identification of Alien Fish Species in Central Russia (Volga-Kama Region)

Karabanov¹,

Ei²,

Dd³

et al. 2021

Preprint

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“…The species is episodically collected in the more northern Beloe Lake, but most likely it does not reproduce there, possibly due to temperature limitations and pressure from some other environmental factors, i.e., increased competition from northern species such as vendace (Coregonus albula), as well as a strong press of predatory species like perch (Perca fluviatilis) and zander (Sander lucioperca). Recent genetic studies have demonstrated [18,30] that the whole population in the Volga basin represents a single genetic group, but the high genetic diversity of Tyulka could be explained by its evolutionary history, namely the differentiation of the freshwater form in the "Saratov Backwaters" after the Khvalyn transgression of the Caspian Sea c.a. 40-20 Ka [31].…”

Section: Three Examples Of the Non-indigenous Species In The Basin Ba...mentioning

confidence: 99%

“…Recent genetic studies have demonstrated [18,30] that the whole population in the Volga basin represents a single genetic group, but the high genetic diversity of Tyulka could be explained by its evolutionary history, namely the differentiation of the freshwater form in the "Saratov Backwaters" after the Khvalyn transgression of the Caspian Sea c.a. 40-20 Ka [31].…”

Section: Three Examples Of the Non-indigenous Species In The Basin Ba...mentioning

confidence: 99%

A Dataset of Non-Indigenous and Native Fish of the Volga and Kama Rivers (European Russia)

Karabanov,

Pavlov,

Dgebuadze

et al. 2023

Data

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Fish in the Volga-Kama River System (the largest river system in Europe) are important as a crucial food source for local populations; fish have the highest trophic level among hydrobionts. The purpose of this research is to describe the diversity of non-indigenous and native fish in the Volga and Kama Rivers, in the European part of Russia. This dataset encompasses data from June 2001 to September 2021 and comprises 1888 records (36,376 individual observations) for littoral and pelagic habitats from 143 sampling sites, representing 52 species from 42 genera in 22 families. The dataset has a Darwin Core standard format and has been fully released in the Global Biodiversity Information Facility (GBIF) under CC-BY 4.0 International license. The data are validated with several international databases such as FishBase, Eschmeyer’s Catalog of Fishes, the Barcode of Life Data System, and the SAS.Planet geoinformations system. Newly established populations have been found for several species belonging to the following Actinopteri families: Alosidae, Anguillidae, Cichlidae, Ehiravidae, Gobiidae, Odontobutidae, Syngnathidae, and Xenocyprididae. Therefore, this dataset can be used in the particular taxon species distribution analysis, which are especially important for non-indigenous species.

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“…At or above 25°C, the homozygote of the southernadaptive LDH-A of fathead minnow has been found to have a significantly lower (higher catalytic efficiency) than that of the northern-adaptive LDH-A and the heterozygote LDH-A (Merritt, 1972). Kilka (Clupeonella cultriventris, Clupeidae), a small fish inhabiting brackish and fresh waters, also has two codominant alleles; LDH-A*100 frequencies are highest in its southernmost population and exhibit a clear south-tonorth clinal pattern in its distribution range between 43° N to 59° N (Karabanov, & Kodukhova, 2018) (Figure S19). Consistently, the LDH-A1*100 allele frequencies of chum salmon were fixed at or near 1.0 in SEA/BC and WA, thus suggesting that the LDH-A1*100 allele of chum salmon is southern-adaptive.…”

Section: Ldh-a1 and Ldh-b2mentioning

confidence: 99%

“…In various fish species, LDH-A and LDH-B genes are predominantly expressed in skeletal muscle and the heart (Powers, Lauerman, Crawford, & DiMichele, 1991;Somero, 2004Somero, , 2010, respectively. The loci have two codominant alleles, and their allele frequencies exhibit clear latitudinal clinal variation (Karabanov, & Kodukhova, 2018;Merritt, 1972;Powers, Lauerman, Crawford, & DiMichele, 1991;Somero, 2004Somero, , 2010. For comparative purposes, we used PEPB (tripeptide aminopeptidase), a digestive enzyme of fish (Govoni, Boehlert, & Watanabe, 1986), because of its possible selection pressure in hatcheries.…”

Section: Introductionmentioning

confidence: 99%

Population structure of chum salmon and selection on the markers collected for stock identification

Kitada

Kishino

2019

Preprint

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Although chum salmon (Oncorhynchus keta, Salmonidae) biomass in the North Pacific is at a historical maximum, the number of individuals returning to Japan, the location of the world’s largest chum salmon hatchery program, has declined substantially over two decades. To search for potential causes of this decline in the context of evolutionary history, we synthesized catch/release and sea surface temperature (SST) statistics, and published genetic data, namely, 53 single nucleotide polymorphisms (SNPs) from 114 locations, lactate dehydrogenase (LDH) and tripeptide aminopeptidase (PEPB) isozymes from 81 locations, and mitochondrial DNA (mtDNA) D-loop haplotypes from 48 locations, in the distribution range (n = 27,170). SST in the summer, when juveniles inhabit Japanese coasts, was found to be negatively correlated with adult return rates 4 years later (r = −0.62). According to SNP-based population-specific FST values, the species may have originated in western Alaska and expanded its distribution southward. At the southern edge of the Asian distribution, the population structure of chum salmon has been rearranged by hatchery operations. Key functions of nine genes characterizing the distinct nature of the Japanese populations are reproduction, regulation of circadian rhythm, bacteria/parasite defense, DNA damage repair, growth and energy metabolism. Thermally adapted, derived alleles of LDH-A1*100, predominantly expressed in skeletal muscle, have often been replaced by ancestral alleles, while the ancestral mtDNA-B3 haplotype is significantly rarer. This genetic replacement might result in lower metabolic efficiencies in skeletal muscle and mitochondria at higher temperatures, thereby leading to the survival decline of juveniles in a warming climate.

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Biochemical Polymorphism and Intraspecific Structure in Populations of Kilka Clupeonella cultriventris (Nordmann, 1840) from Natural and Invasive Parts of Its Range

Cited by 6 publications

References 13 publications

Universal Set of Primers for DNA Identification of Alien Fish Species in Central Russia (Volga-Kama Region)

Universal Set of Primers for DNA Identification of Alien Fish Species in Central Russia (Volga-Kama Region)

A Dataset of Non-Indigenous and Native Fish of the Volga and Kama Rivers (European Russia)

Population structure of chum salmon and selection on the markers collected for stock identification

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