ABSTRACT:The objective of this study was to evaluate the utility of brain tissue slices to determine the effect of plasma and brain tissue nonspecific binding on the brain-to-plasma ratio (K p ). Mouse or rat brain slices (400 m) were prepared using a McIlwain tissue chopper (Surrey, UK) and incubated with 1 g/ml of compound at 37°C either in a physiological buffer to determine the buffer-to-slice concentration ratio, i.e., unbound fraction in brain tissue (f u,slice ), or in plasma to determine the slice-to-plasma concentration ratio (C slice /C plasma ). The unbound fraction in plasma, f u,plasma , was determined using equilibrium dialysis. In vitro-in vivo correlation of the brain-to-plasma ratio was examined for 13 and eight model compounds in mice and rats, respectively. C slice /C plasma and f u,plasma /f u,slice predicted the K p in rats, and C slice /C plasma predicted the K p in FVB mice for non-P-glycoprotein substrates within 3-fold but overpredicted K p for P-glycoprotein substrates by more than 3-fold. However, C slice /C plasma predicted the K p in mdr1a/1b knockout mice for both non-P-glycoprotein and P-glycoprotein substrates. Our present study demonstrates that a brain slice method can be used to differentiate whether a compound having a low K p is due to the effect of low nonspecific binding to brain tissue relative to plasma proteins or because of efflux transport at the blood-brain barrier.Brain is separated from the systemic circulation by two barriers: a blood-brain barrier (BBB) and a blood-cerebrospinal-fluid barrier (BCSFB). The BBB and BCSFB represent physical and enzymatic barriers that restrict and regulate the penetration of compounds into and out of the brain and maintain the homeostasis of the brain microenvironment (Davson and Segal, 1995). Brain penetration is essential for compounds where the site of action is within the central nervous system (CNS). For targets outside the CNS, BBB penetration may need to be minimized to reduce CNS-related side effects (Chen et al., 2003).The brain-to-plasma concentration ratio (K p ) is the most commonly used parameter for measuring brain penetration in a drug discovery setting. A large K p is considered a favorable property of a good CNS compound. This approach implies that a compound having a high K p penetrates into brain tissue better than one having a low K p . However, according to the definition of K p (K p ϭ C brain /C plasma ) and unbound fraction in plasma (f u,plasma ϭ C u,plasma /C plasma ) and brain (f u,brain ϭ C u,brain /C brain ), the following equation can be obtained:K p,in , defined as the ratio of f u,plasma over f u,brain , can be considered the "intrinsic" partition coefficient between brain and plasma. It is determined by nonspecific binding in brain and plasma and is not related to BBB properties. K p,free , defined as the ratio of the free brain concentration (C u,brain ) over the free plasma concentration (C u,plasma ), delineates BBB properties and governs the relationship between free brain and plasma concentrations...