The amino-acid sequence of the light chain of bovine factor X1 is presented. The sequence of 112 of the 140 residues was determined automatically on fragments produced by specific cleavage of arginyl, glutamyl, tryptophanyl, and asparaginyl-glycine bonds. The remainder was determined by conventional procedures. The amino-terminal sequence of the light chain is homologous with the amino-terminal region of bovine prothrombin and, like the latter, appears to contain several residues of a recently discovered unusual amino acid, -y-carboxyglutamic acid. The role of this amino acid in the calciumbinding ability of factor X and prothrombin is discussed.Bovine factor X (Stuart factor) is the zymogen of a protease involved in blood coagulation. Zymogen activation is mediated by activated factor IX (factor IXa), in the presence of factor VIII, calcium, and phospholipid, as well as by Russell's viper venom and by trypsin (1-3). Activated factor X (factor Xa) catalyzes the conversion of prothrombin to thrombin.Purified bovine factor X can be separated chromatographically into two fractions (factors XI and X2) having similar chemical and biological properties (4, 5). As commonly described, factor X is a glycoprotein of molecular weight 54,000, containing about 10% carbohydrate and composed of two polypeptide chains linked by one or more disulfide bonds (4, 6). The light and heavy chains have molecular weights of 16,000 and 38,000, respectively; the carbohydrate is exclusively associated with the heavy chain. The heavy chains of bovine factors X5 and IXa are homologous with trypsin, thrombin, and other mammalian serine proteases (7,8). The homology is particularly apparent in the amino-terminal regions and in the peptide segments surrounding the serine residue of the active site. Furthermore, the amino-terminal sequences of the zymogens, factor IX and prothrombin, and of the light chain of factor X are also homologous (9). These homologies suggest that these three serine proteases involved in blood coagulation and the pancreatic serine proteases have evolved from a common ancestral gene. For this reason, and in order to establish a basis for relating the chemical structure of factor Xa to its function, the determination of its amino-acid sequence was undertaken. This communication presents a preliminary account of the sequence of the light chain.
METHODSPurified bovine factor X, was isolated from bovine plasma (4) by Dr. Kazuo Fujikawa. The protein was reduced and pyridylethylated, and the two chains were separated as described (4).Automatic sequence analysis was performed with the Beckman Sequencer (model 890B) on the intact light chain and on five large fragments prepared as shown diagrammatically in Fig. 1. Two fragments were obtained by cleavage of asparaginyl-glycine bonds (10) and one fragment each by cleavage of peptide bonds adjacent to tryptophanyl (11) and glutamyl (12) residues. The fifth fragment was isolated after a cleavage adjacent to arginyl residues, requiring succinylation of E-amino groups (13) and ...