2022
DOI: 10.1111/bjh.18046
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BCR::ABL1 transcripts and clinical outcome ‐ interrogating the technique

Abstract: Commentary on: Dominy et al. Assessment of quantitative polymerase chain reaction for BCR-ABL1 transcripts in chronic myeloid leukaemia: Are improved outcomes in patients with e14a2 transcripts an artefact of technology? Br J Haematol, 2022; 197:52-62 Fusion Gene Nomenclature -the Human Genome Organisation (HUGO) Gene Nomenclature committee has implemented use of the double colon (::) for the description of fusion genes (e.g. BCR::ABL1) to replace the historical nomenclature (e.g. BCR-ABL1).

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“…Other than biological differences, another possible explanation for the difference in the prognostic impact of the transcript types, especially in terms of molecular responses in the absence of a clear effect on survival, is correlated to technical issues. The real-time quantitative PCR (RT-qPCR) assays employed to measure BCR::ABL1 mRNA levels appear to be able to amplify the e13a2 amplicon more efficiently than the e14a2 amplicon [ 120 , 123 ]. This discrepancy in amplification performance may be related to the difference in amplicon length generated by the RT-qPCR assay (the e14a2 amplicon is approximately twice as large as e13a2), although the sequence itself may also be important [ 124 , 125 , 126 ].…”
Section: Baseline Prognostic Factorsmentioning
confidence: 99%
“…Other than biological differences, another possible explanation for the difference in the prognostic impact of the transcript types, especially in terms of molecular responses in the absence of a clear effect on survival, is correlated to technical issues. The real-time quantitative PCR (RT-qPCR) assays employed to measure BCR::ABL1 mRNA levels appear to be able to amplify the e13a2 amplicon more efficiently than the e14a2 amplicon [ 120 , 123 ]. This discrepancy in amplification performance may be related to the difference in amplicon length generated by the RT-qPCR assay (the e14a2 amplicon is approximately twice as large as e13a2), although the sequence itself may also be important [ 124 , 125 , 126 ].…”
Section: Baseline Prognostic Factorsmentioning
confidence: 99%