Ischemia/reperfusion (I/R) injury occurs in a wide spectrum of disorders ranging from cardiac arrest to acute myocardial infarction and represents a major public health concern.1) Myocardial ischemia induces several pathological changes due to lack of oxygen supply, and post-ischemic reperfusion always worsens the injury. B-type natriuretic peptide (BNP) is a counter-regulatory peptide hormone predominantly synthesized in the ventricular myocardium. BNP is released into the circulation in response to excessive stretching of heart muscle cells, and reflects ventricular wall stress and tissue hypoxia.2) And BNP has been a widely used clinical biomarker for the diagnosis, prognosis, and treatment of heart failure.3,4) Our previous results, in this issue, demonstrated BNP enhanced hypoxia-induced apoptosis in cardiomyocytes.5) However, recent study showed that BNP attenuated reperfusion-induced heart dysfunction by reducing infarct size.6) These paradox effects of BNP seem like its clinical risk that an increased short-term risk of death with recombinant BNP use. 7) Thus the molecular and cellular mechanisms underlying the effect of BNP in myocardial injury have not been completely elucidated.Cardiac reperfusion is associated with dysfunctions in mitochondria that can progress to irreparable myocardial damage. In addition to cellular energy metabolism, mitochondria also have been recognized as key players in regulation of cell death in cardiac injury such as that occurs during I/R. The role of mitochondria during I/R is particularly critical because of the conditions that promote both apoptosis by the mitochondrial pathway and necrosis by irreversible damage to mitochondria in association with mitochondrial permeability transition (MPT). MPT is caused by the opening of mitochondrial permeability transition pores (mPTP) in the inner mitochondrial membrane, leading to matrix swelling, outer membrane rupture, release of apoptotic signaling molecules and irreversible injury to the mitochondria. 8) When I/R-induced cellular dysfunctions converge on mitochondria, especially when accompanied by high Ca 2Ï© concentrations and oxidative stress, mitochondria undergo massive swelling and become uncoupled as a result of the opening of mPTP. 9) If mPTP remains open, cells cannot maintain ATP levels. This will lead to the subsequent release of apoptotic proteins and induce cell death. 10) Another possible mechanism for mPTP opening is that pro-apoptotic Bcl-2 family and second mitochondria-derived activator of caspases/direct inhibitor of apoptosis protein-binding protein with a low isoelectric point (Smac/DIABLO) are believed to regulate the release through mPTP.11) Similarly these proteins play crucial roles in cardiomyocyte apoptosis induced by myocardial reperfusion injury. Growing evidence support the concept that pharmacological inhibition of the mPTP is an effective and promising strategy for the protection of the heart against reperfusion injury.12) Previous studies showed that BNP protected cardiomyocyte by opening of mit...