Bacterial, Fungal, and Mycorrhizal Communities in the Soil Differ between Clearcuts and Insect Outbreaks in the Boreal Forest 50 Years after Disturbance

Bell-Doyon, Philip; Bellavance, Virginie; Bélanger, Louis; Mazerolle, Marc J.; Villarreal, Juan Carlos

doi:10.2139/ssrn.4140847

Cited by 2 publications

(1 citation statement)

References 28 publications

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“…DNA extraction of soil samples was performed using the NucleoSpin kit (MACHEREY-NAGEL, Düren, Germany) following the manufacturer's protocol. We pooled three soil DNA extractions into one mix per plot at an equimolar ratio (Bell-Doyon et al 2022). The V3-V4 hypervariable regions of the 16S rRNA gene were amplified for The first PCR was performed using the following primers: For the V3-V4 hypervariable regions of the 16S rRNA gene, the forward primer 347R (GGAGGCAGCAGTRRGGAAT) and the reverse 803R (CTACCRGGGTATCTAATCC); for the nifH gene, the forward primer Ueda19F (GCI WTY TAY GGI AAR GGI GG) and the reverse primer R6 (GCC ATC ATY TCI CCI GA).…”

Section: Amplicon Sequencingmentioning

confidence: 99%

Differentially abundant bacteria drive the N₂-fixation of a widespread moss in the forest-tundra transition zone

Escolástico-Ortiz

Blasi

Bellenger

et al. 2023

Preprint

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Bryophytes maintain symbiosis with epiphytic bacteria influencing the local nutrient budget. Moss bacterial communities are composed of a core microbiome and bacteria recruited from environmental sources. Notably, symbiotic N2-fixing bacteria contribute to the N budget in northern ecosystems through biological nitrogen fixation. This process may be affected by the abundance of diazotrophs and moss nutrient content. We used the abundant mossRacomitrium lanuginosumin a forest tundra and shrub tundra in Northern Quebec, Canada, to investigate the bacterial and diazotrophic communities associated with habitat type using amplicon sequencing of the bacterial 16S rRNA andnifHgenes and test whether the moss core microbiome has recruitment from the soil bacteria community. ThenifHamplicons and element analysis were used to test the effect of diazotrophic abundance and moss nutrient content on N2-fixation activity estimated by acetylene reduction assays. Moss microbial communities between tundra types hosted similar bacterial diversity but differentially abundant groups. The core microbiome ofR. lanuginosumis composed of bacteria strongly associated with northern mosses with no significant recruitment from the soil. The relative abundances of dominant diazotrophs are significantly correlated with acetylene reduction rates. In contrast, the moss nutrient content did not significantly drive N2-fixation. The proteobacterial generaAzorhizobiumandRhodomicrobiumrepresent newly reported bacteria associated with N2-fixation rates in the tundra. We identified critical bacterial groups related to moss-bacterial symbiosis and N2-fixation in the forest-tundra transition zone, a changing environment susceptible to climate warming.

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Section: Amplicon Sequencingmentioning

confidence: 99%