2017
DOI: 10.18637/jss.v078.i10
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KFAS: Exponential Family State Space Models in R

Abstract: State space modeling is an efficient and flexible method for statistical inference of a broad class of time series and other data. This paper describes the R package KFAS for state space modeling with the observations from an exponential family, namely Gaussian, Poisson, binomial, negative binomial and gamma distributions. After introducing the basic theory behind Gaussian and non-Gaussian state space models, an illustrative example of Poisson time series forecasting is provided. Finally, a comparison to alter… Show more

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Cited by 92 publications
(73 citation statements)
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References 26 publications
(40 reference statements)
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“…The Poisson state space model is solved by using the methodology applied to the exponential family of state space models. The algorithm used here is the KFAS (Kalman Filter and Smoother for Exponential Family State Space Models) algorithm developed by Helske [2015] and available at http://cran.r-project.org/ package5KFAS. The Poisson model is approximated by a Gaussian model by replacing the observations by pseudoobservations using the log-link function # t 5log k t ð Þ.…”
Section: Space State Model Of Extremes Occurrencementioning
confidence: 99%
“…The Poisson state space model is solved by using the methodology applied to the exponential family of state space models. The algorithm used here is the KFAS (Kalman Filter and Smoother for Exponential Family State Space Models) algorithm developed by Helske [2015] and available at http://cran.r-project.org/ package5KFAS. The Poisson model is approximated by a Gaussian model by replacing the observations by pseudoobservations using the log-link function # t 5log k t ð Þ.…”
Section: Space State Model Of Extremes Occurrencementioning
confidence: 99%
“…The LR model is implemented in the glm R package and the KF model is implemented in the KFAS R package (Helske, 2017). The KF model approximates the posterior density by simulating 1000 trials over a section of a single test set of size 108, 035 and is considerably more compute and memory intensive to evaluate than the other classifiers.…”
Section: Resultsmentioning
confidence: 99%
“…Even though dynr can specify some models that other programs cannot, all of the features of other programs that exist for time series modeling are not subsets of dynr. For example, KFAS allows for nonlinear measurement (Helske, 2017a) which is not currently possible in dynr. Moreover, SsfPack has nonlinear measurement capabilities along with many MCMC methods that dynr lacks (Koopman et al, 1999).…”
Section: Discussionmentioning
confidence: 99%
“…However, pomp does not currently support regime-switching functionality beyond the regime switching found in hidden Markov modeling. Helske (2017a) included a review of numerous other packages for non-Gaussian time series models which generally do not involve latent variables.…”
Section: Introductionmentioning
confidence: 99%