<b>Development of microsatellite markers for <i>Aulonemia aristulata</i> (Poaceae) and cross‐amplification in other bamboo species</b>

Abreu, A. G. de; Grombone-Guaratini, Maria Tereza; Monteiro, Magali; Pinheiro, José Baldin; Tombolato, Antônio Fernando Caetano; Zucchi, Maria Imaculada

doi:10.3732/ajb.1000511

Cited by 11 publications

(3 citation statements)

References 4 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The availability of microsatellite markers in bamboo is limited and few genomic SSR markers have been developed for bamboo in recent years (Nayak and Rout 2005;Kaneko et al 2007;Kitamura et al 2009;Dong et al 2012;Dong and Yang 2014). However, a number of researches have highlighted the ability of cross amplification of SSRs in various bamboo species (Sharma et al 2009;Abreu et al 2011;Dong et al 2011;Ndiaye et al 2013;Bhandawat et al 2014;Lin et al 2014;Attigala et al 2017).…”

Section: Genetic Diversitymentioning

confidence: 99%

“…Simple sequence repeats (SSRs) are preferred tool for plant genotyping because they are abundant in genome, informative, codominant and multi-allelic genetic markers; that are also experimentally reproducible and transferable among related species (Mason 2015). In the last decade, several microsatellite markers have been identified in bamboo either by mining from the sequence information available in database ( Barkley et al 2005;Dong et al 2011;Bhandawat et al 2014) or development of novel markers using method based on microsatellite-enriched genomic library (Nayak and Rout 2005;Kaneko et al 2008;Abreu et al 2011;Ndiaye et al 2013). Availability of draft genome sequence of Phyllostachys heterocycla var.…”

Section: Introductionmentioning

confidence: 99%

See 1 more Smart Citation

Genetic diversity and structure of Dendrocalamus hamiltonii natural metapopulation: a commercially important bamboo species of northeast Himalayas

et al. 2019

View full text Add to dashboard Cite

Dendrocalamus hamiltonii is a commercially important bamboo species of India, experiencing population depletion due to heavy extraction from natural forests. Nuclear simple sequence repeats (nSSRs) were used to study the genetic diversity and population genetic structure of 19 natural stands of D. hamiltonii distributed across the northeast Himalayas. A total of 68 nSSR primer pairs of D. latiflorus and Bambusa arundinacea have been tested in D. hamiltonii for their transferability, out of which 17 primers showing positive and polymorphic amplification were used for genotyping. A total of 130 alleles were generated in 535 individuals of all the populations using selected primer pairs. The marker analysis indicated that D. hamiltonii populations have maintained a low level of genetic diversity (h = 0.175, I = 0.291) in northeastern region of India. Despite a large proportion of the genetic variation (83.47%) confined within the populations, a moderate level of genetic differentiation (F ST = 0.165) was observed among the populations. The clustering pattern obtained in UPGMA and STRU CTU RE analysis revealed that most of the populations were clustered in accordance with their geographical distribution. Two populations (DH03 and DH13) exhibiting significant genetic admixture were identified and recommended for in situ conservation. In addition, six highly diverse populations were also suggested for conservation in different geographical area under study. The study has revealed useful nSSR markers for D. hamiltonii, which were lacking earlier and the information generated herein is of paramount importance in devising programs for species conservation and genetic improvement.

show abstract

Section: Genetic Diversitymentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Genetic diversity and structure of Dendrocalamus hamiltonii natural metapopulation: a commercially important bamboo species of northeast Himalayas

et al. 2019

View full text Add to dashboard Cite

show abstract

“…Similarly, DNA barcoding has only been successful for the identification of bamboo to the level of genus (Sosa, Mejía‐Saules, Cuéllar, & Vovides, ). Nevertheless, AFLPs (amplified fragment length polymorphisms) (Ma et al, ; Suyama, Obayashi, & Hayashi, ) and microsatellites (Abreu et al, ) such as SSRs and ISSRs (Ely, Rada, Fermin, & Clark, ; Kitamura & Kawahara, ; Yang, An, Gu, & Tian, ) have been used successfully to identify clones within bamboo populations. New techniques such as RAD‐seq have shown promising results to separate species and individuals (Wang, Zhao, Eaton, Li, & Guo, ) and to establish phylogenetic relationships between genera (Wang et al, ).…”

Section: Introductionmentioning

confidence: 99%

Guidelines for including bamboos in tropical ecosystem monitoring

et al. 2020

View full text Add to dashboard Cite

Bamboos are a diverse and ecologically important group of plants that have the potential to modulate the structure, composition, and function of forests. With the aim of increasing the visibility and representation of bamboo in forest surveys, and to standardize techniques across ecosystems, we present a protocol for bamboo monitoring in permanent research plots. A bamboo protocol is necessary because ing the average dimensions or (b) measuring all culms. With data from 1-ha plots in the Peruvian Andes, we show that both approaches provide very similar estimates of bamboo basal area. We suggest including all mature culms rooted inside change the to each plot from all woody bamboo species with maximum diameters ≥1 cm.We also present recommendations on how to collect vouchers of bamboo species for identification. Data collected according to our proposed protocols will increase our understanding of regional and global patterns in bamboo diversity and the role of bamboo in forest dynamics.Abstract in Spanish is available with online material.

show abstract

Molecular Markers in Bamboos: Understanding Reproductive Biology, Genetic Structure, Interspecies Diversity, and Clonal Fidelity for Conservation and Breeding

Konzen

Pozzobon

Souza

et al. 2021

Biotechnological Advances in Bamboo

View full text Add to dashboard Cite

**Development of microsatellite markers for Aulonemia aristulata (Poaceae) and cross‐amplification in other bamboo species**

Abstract: These markers will be useful for studies on the genetic diversity and structure of A. aristulata, which are important for future conservation, management and breeding programs of this species.

Cited by 11 publications

References 4 publications

Genetic diversity and structure of Dendrocalamus hamiltonii natural metapopulation: a commercially important bamboo species of northeast Himalayas

Genetic diversity and structure of Dendrocalamus hamiltonii natural metapopulation: a commercially important bamboo species of northeast Himalayas

Guidelines for including bamboos in tropical ecosystem monitoring

Molecular Markers in Bamboos: Understanding Reproductive Biology, Genetic Structure, Interspecies Diversity, and Clonal Fidelity for Conservation and Breeding

Contact Info

Product

Resources

About