Leishmaniasis encompasses a large spectrum of clinical diseases which, depending upon the parasite species and the host's immune response, can have various outcomes (16). Our understanding of the factors that lead to this diversity of clinical symptoms has, in large part, come from studies using murine models and particularly Leishmania major. While the majority of mouse strains can control infection with L. major, virtually all develop nonhealing lesions full of parasites when infected cutaneously with L. mexicana (4). Studies with the BALB/c mouse have indicated that the nonhealing response of this mouse strain to infection with L. major is LACK antigen dependent (13), while the nonhealing response to L. mexicana is independent of this antigen (27). Conversely, our studies have implicated cysteine peptidases (CPs) as major virulence factors for L. mexicana (reviewed in reference 17). Information about the apparent functions and importance of CPs in the host-parasite interaction was obtained via the generation of mutants deficient in the CPA and CPB genes (⌬cpa and ⌬cpb mutants). L. mexicana mutants deficient in the multicopy CPB gene array (⌬cpb mutants) have reduced virulence, with poor lesion growth, for BALB/c mice (2, 18). Only the reexpression of multiple CPB genes from a cosmid significantly restored virulence (8), suggesting that the multiple genes have complementary functions. CPA CPB double null mutant parasites (⌬cpa ⌬cpb mutants) were less infective for BALB/c mice than ⌬cpb mutants (2, 18), which not only implicates CPA as a virulence factor but also indicates that there is some redundancy in function between CPA and CPB. CPA, together with CPB1 and CPB2 (the CPB isoforms encoded by the first 2 genes of the 19-gene CPB tandem array), is expressed in metacyclic promastigotes, suggesting roles for these CPs in the virulence of this life cycle stage. Indeed, the L. mexicana ⌬cpa ⌬cpb mutants are defective in metacyclogenesis, due to an impairment of autophagy-dependent protein turnover required for differentiation (28).Small-molecule inhibitors of CPB have some efficacy against Leishmania, both in vitro and in vivo (24). These inhibitors are thought to be active against not only CPB but also CPA and CPC, and their toxicity to Leishmania may be a consequence of the inhibition of multiple enzymes. Nevertheless, these results confirm the importance of CPs in the host-parasite interaction. Treatment with a natural CP inhibitor, cystatin, promoted a protective response against Leishmania infection and a switch from a predominately Th2 to a Th1 response (7). Leishmania lacks cystatins, but the parasite possesses an unusual inhibitor of CPs (designated ICP), which does not occur in mammals (22). Leishmania ICP has been shown to be a potent inhibitor