AbstractEcologically relevant traits of organisms inhabiting an ecosystem determine its functional fingerprint. Quantifying changes in the shape, volume and shifts in the position of functional fingerprints can provide information about the effects of diversity loss or gain through time, and is a promising means to monitor ecological integrity. This, however, is seldom possible owing to limitations in historical surveys and lack of data on organismal traits, particularly in diverse tropical regions. Using detailed bird surveys from four time periods across more than one century and morphological traits of 233 species, we quantified changes in the avian functional fingerprint of a tropical montane forest site in the Andes of Colombia. We found that 79% of the variation in functional space, regardless of time period, was described by three major axes summarizing body size, dispersal ability, and habitat breadth. Changes in species composition caused significant alterations of the functional fingerprint of the assemblage, with 35 – 60% reductions in functional richness and dispersion. Owing to species extirpations and to novel additions to the assemblage, functional space is currently smaller and at least 11% different to what it was a century ago, with fewer large-sized species, more good dispersers, and fewer habitat specialists. Extirpated species had high values of functional uniqueness and distinctiveness, resulting in large reductions of functional richness and dispersion after their loss, implying potentially important consequences for ecosystem functioning. Conservation efforts aimed at maintaining ecosystem function must move beyond maintaining species numbers to designing strategies for the maintenance of ecological function by identifying and conserving species with traits conferring high vulnerability.