Background
α-1-antitrypsin (A1AT) deficiency results from a genetic disorder at two common loci. Diagnosis requires quantitation of A1AT and subsequent identification of the specific variant. The current algorithm of laboratory testing for the diagnosis of A1AT deficiency uses a combination of quantitation (nephelometry), genotyping and/or phenotyping. We developed a novel multiple reaction monitoring LC-MS/MS method for simultaneous quantitation of A1AT and the identification of the two most common deficiency alleles present in 95% of the patients with A1AT deficiency.
Method
Serum samples (n=40) were digested with trypsin and appropriate 13C/15N-labeled standard peptides added. LC-MS/MS analysis was performed with a 0.5×150 mm C18 column and H2O:acetonitrile:n-propanol (A:98/1/1/0.2 and B:10/80/10/0.2; 12 μL/min) mobile phase in positive ion mode on a TSQ Quantum triple quadrupole MS system. The A1AT concentration was obtained by comparison to a calibration curve and the phenotype by the presence or absence of variant peptides. Results were compared to the current phenotyping assay by isoelectric focusing (IEF) and the immunonephelometry quantitative assay.
Results
For the A1AT allele detection, in 39 of 40 samples, the LC-MS/MS results were identical to those obtained by IEF gel electrophoresis. The single discrepant result was rerun by IEF at a lower dilution and the results were in concordance. The A1AT quantitation by LC-MS/MS also compared favorably with nephelometry.
Conclusion
This LC-MS/MS method correlates well with current phenotyping and nephelometric assays. It is a promising method with the potential to improve the laboratory diagnosis of genetic A1AT deficiency.