“…These methods include homology modeling, docking, and 3D threading techniques, which are widely used along with ANN, SVM, and HMM to detect spatial epitopes. In the present study, we applied these techniques as major methods of identification (7,18). In general, methods used to identify antigenic epitopes should be structurally flexible on the protein surface, exposed to solvent, and contain charged amino acids and epitope hydrophilic amino acids (3,(18)(19)(20).…”