Proper soil cover management for citrus cultivation can contribute to increased productivity and improved soil quality. This study examined five different vegetative coverings [Urochloa brizantha; U. decumbens, U. ruziziensis, spontaneous vegetation, and herbicide application (glyphosate) in the total area] in the inter rows of a Natal orange orchard [Citrus sinensis (L.) Osbeck] grafted on the Swingle citrumelo (C. paradisi × Poncirus trifoliata). Their effects on the microbiological and chemical attributes of the soil and the vegetative development in the orchard were examined. Chemical (Ca2+, Mg2+, K+, P, pH, H+Al, CECpH7, base saturation, and OM) and microbiological (carbon and nitrogen of microbial biomass, basal respiration, and metabolic quotient) soil attributes in the rows and inter-rows were evaluated for the orchard in 2018 and 2019. There was a significant difference for most variables in the 2 years studied, emphasizing 2019 for microbiological parameters and OM, with the latter being 14.8% lower in the treatment with glyphosate in the total area compared to the treatment with spontaneous vegetation. The results showed the benefits of vegetation cover with brachiaria in inter-rows of the Natal sweet orange orchard in the chemical and microbiological attributes of the soil, especially in carbon and nitrogen of the microbial biomass.