Collagen is a protein material with superior mechanical properties. It consists of collagen fibrils composed of a staggered array of ultra-long tropocollagen (TC) molecules. Theoretical and molecular modeling suggests that this natural design of collagen fibrils maximizes the strength and provides large energy dissipation during deformation, thus creating a tough and robust material. We find that the mechanics of collagen fibrils can be understood quantitatively in terms of two critical molecular length scales S and R that characterize when (i) deformation changes from homogeneous intermolecular shear to propagation of slip pulses and when (ii) covalent bonds within TC molecules begin to fracture, leading to brittle-like failure. The ratio S͞R indicates which mechanism dominates deformation. Our modeling rigorously links the chemical properties of individual TC molecules to the macroscopic mechanical response of fibrils. The results help to explain why collagen fibers found in nature consist of TC molecules with lengths in the proximity of 300 nm and advance the understanding how collagen diseases that change intermolecular adhesion properties influence mechanical properties.deformation ͉ fracture ͉ mechanics ͉ tropocollagen ͉ length scale M aterials found in nature often feature hierarchical structures ranging from the atomistic and molecular scales to macroscopic scales (1-5). Many biological materials found in living organisms, often protein-based, feature a complex hierarchical design.Collagen, the most abundant protein on earth, is a fibrous structural protein with superior mechanical properties, and it provides an intriguing example of a hierarchical biological nanomaterial (4, 6-18). Collagen consists of tropocollagen (TC) molecules that have lengths of L Ϸ 280 nm and diameters of Ϸ1.5 nm, leading to an aspect ratio of Ϸ190 (6, 7, 9, 18-20). Staggered arrays of TC molecules form fibrils, which arrange to form collagen fibers (Fig. 1).Collagen plays an important role in many biological tissues, including tendon, bone, teeth, and cartilage (6,7,13,15,19,21). Severe mechanical tensile loading of collagen is significant under many physiological conditions, as in joints and in bone (22, 23). Despite significant research effort over the past couple of decades, the geometry and typical length scales found in collagen fibrils, the deformation mechanisms under mechanical load, and, in particular, the relationship between those mechanisms and collegen's molecular and intermolecular properties, are not well understood. Moreover, the limiting factors of the strength of collagen fibrils and the origins of toughness remain largely unknown.Some experimental efforts focused on the deformation mechanics of collagen fibril at nanoscale, including the characterization of changes of D-spacing and fibril orientation (18,20,24), analyses that featured x-ray diffraction (18) and synchrotron radiation experiments (19). Other experimental studies were focused on the averaged response of arrays of collagen fibrils, considering nan...