We consider two-dimensional, non-relativistic quantum system with asymptotically straight soft waveguide. We show that the local deformation of the symmetric waveguide can lead to the emerging of the embedded eigenvalues living in the continuous spectrum. The main problem of this paper is devoted to the analysis of weak perturbation of the symmetric system. We show that the original embedded eigenvalues turn to the second sheet of the resolvent analytic continuation and constitute resonances. We describe the asymptotics of the real and imaginary components of the complex resonant pole depending on deformation. Finally, we generalize the problem to three dimensional system equipped with a soft layer.