Public reporting burden for this collection of information is estimated to average 1 hour per response, including the time for reviewing instructions, searching existing data sources, gathering and maintaining the data needed, and completing and reviewing this collection of information. Send comments regarding this burden estimate or any other aspect of this collection of information, including suggestions for reducing this burden to Department of Defense, Washington Headquarters Services, Directorate for Information Operations and Reports (0704-0188), 1215 Jefferson Davis Highway, Suite 1204, Arlington, VA 22202-4302. Respondents should be aware that notwithstanding any other provision of law, no person shall be subject to any penalty for failing to comply with a collection of information if it does not display a currently valid OMB control number. PLEASE DO NOT RETURN YOUR FORM TO THE ABOVE ADDRESS.
REPORT DATE
01-11-2006
REPORT TYPE
Annual Summary
DATES COVERED
PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) 8. PERFORMING ORGANIZATION REPORT NUMBERDana-Farber Cancer Institute Boston. MA 02115
SPONSORING / MONITORING AGENCY NAME(S) AND ADDRESS(ES) 10. SPONSOR/MONITOR'S ACRONYM(S)
U.S. Army Medical Research and Materiel Command Fort Detrick, Maryland 21702-5012
SPONSOR/MONITOR'S REPORT NUMBER(S)
DISTRIBUTION / AVAILABILITY STATEMENTApproved for Public Release; Distribution Unlimited
SUPPLEMENTARY NOTESOriginal contains colored plates: ALL DTIC reproductions will be in black and white.
ABSTRACT
NOT PROVIDED
SUBJECT TERMSProstate cancer, genomics, chromosome structure, cancer progression and metastasis, single nucleotide polymorphisms, genotyping digital karyotyping cytogenetics, loss of heterozygosity, oligonucleotide, array
References……………………………………………………………………………13
Appendices……………………………………………………………………………16Award Number W81XWH-05-1-0031
A. IntroductionThe proposal for DOD Award #W81XWH-05-1-0031 focused on the systematic mapping of largescale genetic alterations in prostate cancer, and relating these mutations to prostate cancer progression. To that end, the proposal suggested the application of single nucleotide polymorphism (SNP) array technology to characterize large-scale genetic alterations in the prostate cancer genome.1. High-resolution single nucleotide polymorphism arrays SNPs are the most common genetic variation in the human genome; more than 6,000,000 have been identified (2). The use of single-nucleotide polymorphisms to study the germline genetic susceptibility to disease is well appreciated and an evolving technology designed to conduct such studies is the use of oligonucleotide arrays to interrogate these SNP markers in a high-throughput, highly parallel fashion (3 5). These oligonucleotide arrays specifically detect the two different alleles of each SNP (Figure 1). The most advanced commercially available 100K arrays detect 116,204 SNPs. With a median intermarker distance of 8.9 kb, this represents greater than 5 SNPs per gene, affording state-of-the art resolution for largescale genotyping pu...