“…A number of quantitative trait loci (QTL) associated with MD resistance have been reported outside of the MHC in various lines and breeds of chicken (Vallejo et al, 1998; Yonash et al, 1999; McElroy et al, 2005; Cheng et al, 2008; Heifetz et al, 2009). Nonetheless, like many other quantitative traits, only a very small number of genes have been identified that confer MD resistance (Liu et al, 2001b, 2003; Niikura et al, 2007; Praslickova et al, 2008), and from these, only a fraction of the phenotypic variance has been accounted for potentially due to small effect size, large type 1 error rates, and low LD or different phase between markers and quantitative trait nucleotides (QTN) (Goddard and Hayes, 2009; Manolio et al, 2009). Therefore, utilization of these regions in marker-assisted selection programs has been limited.…”