Association analysis for grain quality traits in rice

Verma, Harendra; Pathak, Khanin; Rathi, S. P. S.; Sarma, R. N.

doi:10.5958/0975-6906.2015.00080.2

Cited by 2 publications

(2 citation statements)

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“…This marker expressed 292bp of allele size for the trait of Gel Consistency. This marker is also associated with grain weight (GW), length and width ratio (LWR) Verma et al, 2015). In our study also, thismarker ampli ed 292bp in all the genotypes of rice and peanut but with low intensity in peanut, as the reasons explained earlier (Fig.…”

Section: Sw5 (Seed Width)supporting

confidence: 83%

Transferability of Rice Yield and Seed Quality Gene Tagged Markers to Peanut (Arachis hypogaeaL.): A Way Ahead in Groundnut Improvement

Sukrutha

Srividhya

Vemireddy

et al. 2023

Preprint

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Background The progress in tagging/mapping of genes in crops like Arabidopsis, rice, maize etc. is far ahead when compared to the major legume crops viz. groundnut, chickpea, redgram, greengram, soyabean etc., even in the post release period of legume genome sequence databases. This can be attributed mainly to low level of available molecular genetic diversity in these crops. Methods The study of transferability of Rice yield gene tagged markers to Peanut was carried out by employing17 diverse groundnut genotypes. ANOVA revealed significant differences for six yield and seven seed quality traits studied which indicates availability of ample amount of variability among the genotypes. Molecular analysis was conducted to analyse the transferability of known rice yield, grain size and micronutrient content (Fe and Zn) controlling gene tagged markers (GTMs) to peanut by using 45 GTMsthat targets 24 known functional genes. Results Of 45 markers, 31 (76%) were transferable to peanut, denotes very high conservation at functional regions. The extent of amplification of rice GTMs at individual groundnut genotype level was observed from 79.17% for the cultivated varieties (2n = 4x) Nithya Haritha, Greeshma, Prasuna, Kalahasti, Narayani and with a wild genotype, Arachis villosa(2n = 2x) to 91.67% for Dheeraj variety. The analysis on transferable efficiency of individual rice GTM revealed that 17 markers belong to 14 rice genes showed amplification among all the 17groundnut genotypes (100%) under study. Conclusions Hence, focusing research on the available knowledge of functionally characterized genes of molecular model crops and vast list of annotated orthologous genes present in ‘Omics’ databases, widens the scope to tag the genes at molecular level and thereby to improve the cropslike groundnutthat has meager progress in gene tagging;by pyramiding of desirable genes with high veracity.

show abstract

Section: Sw5 (Seed Width)supporting

confidence: 83%

Transferability of Rice Yield and Seed Quality Gene Tagged Markers to Peanut (Arachis hypogaeaL.): A Way Ahead in Groundnut Improvement

Sukrutha

Srividhya

Vemireddy

et al. 2023

Preprint

View full text Add to dashboard Cite

show abstract

“…This marker expressed 292bp of allele size for the trait of Gel Consistency. This marker is also associated with grain weight (GW), length and width ratio (LWR) Verma et al,2015). In our study also, this marker ampli ed 292bp in all the genotypes of rice and peanut but with low intensity in peanut, as the reasons explained earlier (Supplementary Fig.…”

Section: Gw5 (Grain Width and Weightsupporting

confidence: 80%

Possibility for Exploitation and Identification of Rice Yield and Seed Quality Orthologs in Peanut (Arachis hypogaea L.)

Sukrutha

Akkareddy

Vemireddy

et al. 2023

Preprint

View full text Add to dashboard Cite

Background The progress in tagging/mapping of genes in crops like Arabidopsis, rice, maize etc. is far ahead when compared to the major legume crops viz. groundnut, chickpea, redgram, greengram, soyabean etc., even in the post release period of legume genome sequence databases. This can be attributed mainly to low level of available molecular genetic diversity in these crops. Methods The study of transferability of Rice yield gene tagged markers to Peanut was carried out by employing17 diverse groundnut genotypes. ANOVA revealed significant differences for six yield and seven seed quality traits studied which indicates availability of ample amount of variability among the genotypes. Molecular analysis was conducted to analyse the transferability of known rice yield, grain size and micronutrient content (Fe and Zn) controlling gene tagged markers (GTMs) to peanut by using 45 GTMsthat targets 24 known functional genes. Results Of 45 markers, 31 (76%) were transferable to peanut, denotes very high conservation at functional regions. The extent of amplification of rice GTMs at individual groundnut genotype level was observed from 79.17% for the cultivated varieties (2n = 4x) Nithya Haritha, Greeshma, Prasuna, Kalahasti, Narayani and with a wild genotype, Arachisvillosa(2n = 2x) to 91.67% for Dheeraj variety. The analysis on transferable efficiency of individual rice GTM revealed that 17 markers belong to 14 rice genes showed amplification among all the 17groundnut genotypes (100%) under study. Conclusions Hence, focusing research on the available knowledge of functionally characterized genes of molecular model crops and vast list of annotated orthologous genes present in ‘Omics’ databases, widens the scope to tag the genes at molecular level and thereby to improve the cropslike groundnutthat has meager progress in gene tagging;by pyramiding of desirable genes with high veracity.

show abstract

Association analysis for grain quality traits in rice

Cited by 2 publications

References 0 publications

Transferability of Rice Yield and Seed Quality Gene Tagged Markers to Peanut (Arachis hypogaeaL.): A Way Ahead in Groundnut Improvement

Transferability of Rice Yield and Seed Quality Gene Tagged Markers to Peanut (Arachis hypogaeaL.): A Way Ahead in Groundnut Improvement

Possibility for Exploitation and Identification of Rice Yield and Seed Quality Orthologs in Peanut (Arachis hypogaea L.)

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