“…One promising tool of flow cytometry consists of characterising and distinguishing different the physiological states of microorganisms at the single-cell level (Joux & Lebaron, 2000) (Nebevon-Caron et al, 2000). The ability of flow cytometry to distinguish between different physiological states is important for assessing the growth of microorganisms in oligotrophic environments (Berney et al, 2007), the survival of pathogenic microorganisms (Vital et al, 2007) and the effects of bactericidal treatments or different environmental stresses on microbial activity (Prorot et al, 2008) (Ziglio et al, 2002) (Foladori et al, 2010a) (Booth, Ian R, 2002). When employed in conjunction with fluorescent dyes, flow cytometry is able to measure various biological parameters (i.e., nucleic acid content, metabolic activity, enzyme activity and membrane integrity), allowing the detection of microorganisms at viable, viable but non-cultivable (or intermediate) and non-viable states (Joux & Lebaron, 2000) (Walberg et al, 1999).…”