Background: In most health facilities, microscopic examination of peripheral blood smears is performed for definitive diagnosis of malaria. Despite it produces reliable results about both the infection status and level of parasitemia, microscopic examination of malaria is affected by skill of the laboratory personnel, workload, condition of microscopes and quality of laboratory supplies. Therefore, continuous monitoring of the performance of laboratories is critical in order to make timely corrections. Objective: To assess malaria microscopy performance of diagnostic laboratories in west Amhara region.Methods: A facility based cross-sectional study was conducted from July 2017 to July 2019 among thirty malaria diagnostic laboratories in west Amhara region. Thirty slides were collected from participating laboratories every quarter. Collected slides were taken to Amhara Public Health Institute (APHI) reference laboratory and re-checked by malaria microscopist who were blind to the results from health facilities. Percentage of test agreement, rates of false positive, false negative and species misdiagnosis were calculated using Excel 2010.Results: Among a total of 6689 slides re-examined, results of 6146 slides were the same with that of participating laboratories to give a test agreement of 97.31% and 94.6% in parasite detection and species identification, respectively. Variations in the overall performance of individual laboratories were seen within a range of 81.55% to 97.27% test agreement. Results of 543 (8.12%) slides were discordant, of which 363 (5.4%), 93 (1.4%) and 87 (1.3%) were due to species misdiagnosis, false positive and false negative results, respectively. Conclusion: There was good test agreement between participated laboratories and APHI laboratory. More accurate performance is expected as the country is tracking to malaria elimination. Hence, strengthening the EQA program by integrating rechecking with onsite evaluation is recommended.K