Assessment of genetic diversity and phenetic relationships among some Bangladeshi cultivars of cucumber (Cucumis sativus L.) using isozyme and protein profiling

Habiba,; Sarkar, Dilruba; Haque, Md. Enamul; Islam, Md. Asadul; Mukherjee, Anit; Sikdar, Biswanath

doi:10.1007/s42535-019-00065-w

Cited by 3 publications

(5 citation statements)

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“…Biochemical markers like isozymes and proteins have evolved as a result of the restrictions of morphological markers [ 29 ]. However, the genetic environment of each taxon affects how proteins attach to each other, and as a result, it is advantageous to examine the genetic diversity among cultivars [ 29 ]. SDS-PAGE is an efficient tool for studying the plant genetic variety in a relatively short period.…”

Section: Discussionmentioning

confidence: 99%

“…SDS-PAGE analysis can be readily used for a variety of purposes, such as biosystematics research, germplasm differentiation, varietal validation, determination of phylogenetic interactions among different cultivars, and the production of relevant information to balance measurement. SDS-PAGE analysis has been successful in evaluating the relationship between cultivars [ 29 ].…”

Section: Discussionmentioning

confidence: 99%

“…A higher polymorphism has also been detected in other species. For instance, nine cucumber cultivars demonstrated 95.65% polymorphism, according to Habiba et al [ 29 ]. While isozyme pattern is an extremely effective genetic marker that costs less than DNA-based markers and may be detected by faster and simpler laboratory procedures.…”

Section: Discussionmentioning

confidence: 99%

“…While isozyme pattern is an extremely effective genetic marker that costs less than DNA-based markers and may be detected by faster and simpler laboratory procedures. Some enzymes are more advantageous than others in variety and polymorphism analyses, according to Habiba et al [ 29 ]. For instance, in this study, peroxidase (POD) and polyphenyl oxidase (PPO) enzymes produced 5 bands of which one was polymorphic ( R m of 0.6).…”

Section: Discussionmentioning

confidence: 99%

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Morphological, Biochemical, and Molecular Diversity Assessment of Egyptian Bottle Gourd Cultivars

Ibrahim,

Alhaithloul,

Shamseldin

et al. 2024

Genetics Research

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The genetic variability and relationships between ten bottle gourd cultivars were evaluated based on morphological, biochemical, and molecular parameters. The results displayed high variability among selected cultivars in terms of photosynthetic pigments, total free amino acids, total phenol content, isozymes pattern, and protein electrophoresis. Furthermore, differences in molecular markers were revealed by the SCoT technique. The peroxidase (POD) and polyphenyl oxidase (PPO) isozymes patterns did not detect significant differences in bands among cultivars. The protein patterns revealed seventeen bands ranging from 126 to 9 kDa and five polymorphic bands representing 29.41%. On the other hand, eight SCoT primers were used to evaluate the genetic variability and relationships between the ten Egyptian bottle gourd cultivars. The results of SCoT analysis detected 44 amplicons with 50% polymorphism. In addition, the results of the phylogenetic tree that is constructed based on the similarity coefficient revealed by SCoT analysis confirm the results of biochemical analysis indicating a genetic relationship between the most efficient bottle gourd cultivars (S1 and S2 cultivars). In addition, there is a genetic relationship among the less efficient bottle gourd cultivars (S4 and S5 cultivars). These results could be beneficial to distinguish among bottle gourd cultivars in the plant breeding programs.

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Section: Discussionmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

Section: Discussionmentioning

confidence: 99%

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Morphological, Biochemical, and Molecular Diversity Assessment of Egyptian Bottle Gourd Cultivars

Ibrahim,

Alhaithloul,

Shamseldin

et al. 2024

Genetics Research

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“…There are 2 main branches, branch I and branch II, with a similarity coefficient of 0.3846. According to Habiba et al (2019), the similarity level is far if it is less than 0.6 or 60%. Species with many similarities will have closer kinship relationships; conversely, species with fewer similarities will have more distant kinship relationships (Muntoreanu et al 2011).…”

Section: Phenetic Analysismentioning

confidence: 99%

The phenetic relationship of citrus plants based on the morphological and anatomical characteristics

NURZAMAN,

SETIAWATI,

HASAN

et al. 2024

Biodiversitas

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Abstract. Nurzaman M, Setiawati T, Hasan R, Qotrunnada NK, Kusmoro J, Permadi N, Julaeha E. 2024. The phenetic relationship of citrus plants based on the morphological and anatomical characteristics. Biodiversitas 25: 1201-1213. Indonesia stands as a global biodiversity hub, boasting an exceptional richness that earns it the distinction of being a mega-biodiversity country. Among its diverse ecosystems, the Rutaceae family holds significance, encompassing numerous genera, notably the Citrus genus, which showcases a splendid array of citrus plants. This research aimed to determine phenetic relationships based on the morphological and anatomical characters of seven citrus plants (Citrus reticulata var. Chokun, C. reticulata var. Fremont, C. reticulata var. Santang, C. reticulata var. Dekopon, C. aurantium var. variegata, C. aurantium, and C. limon) in Parongpong District, West Bandung Regency, West Java. The method used in this research was explorative with purposive sampling. This study collected three samples for respective citrus plants for character observations of leaf morphology, anatomy, and fruit morphology. Morphology and anatomy observations were conducted in the Department of Biology, Padjadjaran University laboratory. The description of morphological and anatomical data obtained from each orange plant was then analyzed using NTSYS PC version 2.11a software to obtain similarity values using the dendrogram analysis method. Phenetic analysis of seven orange plants produced a dendrogram divided into 2 main branches, branch I and branch II, with a similarity coefficient of 0.3846. Branch I consists of Chokun orange (Citrus reticulata var. Chokun), Fremont orange (C. reticulata cv. Fremont), Santang orange (C. reticulata cv. Santang), and variegated orange (C. sinensis cv. variegata) and branch II consists of dekopon orange (C. reticulata var. Dekopon), Sunkist orange (C. aurantium), and lemon (C. limon).

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Estimation of genetic diversity and its exploitation in plant breeding

2021

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Assessment of genetic diversity and phenetic relationships among some Bangladeshi cultivars of cucumber (Cucumis sativus L.) using isozyme and protein profiling

Cited by 3 publications

References 58 publications

Morphological, Biochemical, and Molecular Diversity Assessment of Egyptian Bottle Gourd Cultivars

Morphological, Biochemical, and Molecular Diversity Assessment of Egyptian Bottle Gourd Cultivars

The phenetic relationship of citrus plants based on the morphological and anatomical characteristics

Estimation of genetic diversity and its exploitation in plant breeding

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