Discrimination between live and apoptotic cells is important for accurate determination of viable CD34 þ cells in hematopoietic stem cell transplant products. SYTO16 is a sensitive fluorescent dye for discriminating live from apoptotic leukocytes. The incidence of apoptotic leukocytes in paired samples of fresh and cryopreservedthawed cord blood (CB) was determined by the SYTO16/7-AAD flow cytometric assay. Cell migration and expression of the cell homing molecule L-selectin (CD62L) was determined in relation to SYTO16 staining. SYTO16 detected significant proportions of apoptotic lymphocytes and CD34 þ cells in fresh and thawed CB buffy-coat samples that were not detected by 7-AAD. Compared to fresh CB, the proportion of apoptotic lymphocytes and CD34 þ cells significantly increased following thawing. Significantly higher proportions of live SYTO16 bright lymphocytes and CD34 þ cells were found in the migrated cell population compared to the nonmigrated population. Significantly fewer lymphocytes and CD34 þ cells expressed CD62L following thawing. Absence of CD62L expression was strongly correlated with apoptotic/SYTO16 dim lymphocytes and CD34 þ cells. Cryopreserved-thawed CB contains significant proportions of apoptotic lymphocytes and CD34 þ cells that are not detected by 7-AAD. SYTO16 offers a sensitive method for discrimination of live from apoptotic leukocytes and assists in accurate assessment of CB quality and suitability for use in clinical transplantation.