2022
DOI: 10.1021/acs.jctc.1c01034
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Assessing the Accuracy of Machine Learning Thermodynamic Perturbation Theory: Density Functional Theory and Beyond

Abstract: Machine learning thermodynamic perturbation theory (MLPT) is a promising approach to compute finite temperature properties when the goal is to compare several different levels of ab initio theory and/or to apply highly expensive computational methods. Indeed, starting from a production molecular dynamics trajectory, this method can estimate properties at one or more target levels of theory from only a small number of additional fixed-geometry calculations, which are used to train a machine learning model. Howe… Show more

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Cited by 16 publications
(24 citation statements)
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“…As discussed thoroughly in Ref. 32 for systems similar to the one considered here, the occurrence of this issue can be identified even if the exact target trajectory is unknown. Thermodynamic perturbation theory is based on the reweighting of the statistics sampled by the production trajectory to obtain the target level statistics (see Eq.…”
Section: Resultsmentioning
confidence: 74%
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“…As discussed thoroughly in Ref. 32 for systems similar to the one considered here, the occurrence of this issue can be identified even if the exact target trajectory is unknown. Thermodynamic perturbation theory is based on the reweighting of the statistics sampled by the production trajectory to obtain the target level statistics (see Eq.…”
Section: Resultsmentioning
confidence: 74%
“…In practice, this effect can be measured by the I w index, as defined in Ref. 32. This index assumes the value of 0.5 in the optimal configuration overlap case and tends to 0 for decreasing overlaps.…”
Section: Resultsmentioning
confidence: 99%
See 2 more Smart Citations
“…Alternatively, one could parametrize several potentials that are trained to model the 2′- O -transesterification reaction in different RNA environments and then perform sampling with each potential when exploring the mechanism in an RNA environment not included in the training. In the abovementioned discussion, the trained MLPs are used to perform the sampling; however, MLPs can also be utilized in another strategy whereby an uncorrected reference potential is sampled, and an MLP is trained to a small number of configurations to estimate the target potential energies required for thermodynamic perturbation. , …”
Section: Introductionmentioning
confidence: 99%