2016
DOI: 10.1021/acs.jctc.6b00764
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Assessing Ion–Water Interactions in the AMOEBA Force Field Using Energy Decomposition Analysis of Electronic Structure Calculations

Abstract: AMOEBA is a molecular mechanics force field that addresses some of the shortcomings of a fixed partial charge model, by including permanent atomic point multipoles through quadrupoles, as well as many-body polarization through the use of point inducible dipoles. In this work, we investigate how well AMOEBA formulates its non-bonded interactions, and how it implicitly incorporates quantum mechanical effects such as charge penetration (CP) and charge transfer (CT), for water-water and water-ion interactions. We … Show more

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Cited by 86 publications
(150 citation statements)
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References 116 publications
(270 reference statements)
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“…For the water dimer, the oxygen-oxygen distance is used as the scanned coordinate, where as for water trimer one of the water molecules is moved from the centroid of the triangle formed by the three oxygen atoms. 53,54 Additionally, permanent electrostatics were computed for 50 random configurations extracted from a 50 ps MD simulation at 298 K, with each configuration We have previously shown that the incorporation of atomic anisotropic polarizabilities in the MB-UCB offers significantly better agreement with the ALMO-EDA polarization for the water dimer, trimer and the MD-pentamer results than found using standard AMOEBA03. 57 Figure 1c re-examines the anisotropic polarization energy of MB-UCB for the water dimer, but this time for the two multipole truncations, in which we find that both agree very well with the ALMO-EDA polarization energy.…”
Section: Simulation Protocolmentioning
confidence: 99%
“…For the water dimer, the oxygen-oxygen distance is used as the scanned coordinate, where as for water trimer one of the water molecules is moved from the centroid of the triangle formed by the three oxygen atoms. 53,54 Additionally, permanent electrostatics were computed for 50 random configurations extracted from a 50 ps MD simulation at 298 K, with each configuration We have previously shown that the incorporation of atomic anisotropic polarizabilities in the MB-UCB offers significantly better agreement with the ALMO-EDA polarization for the water dimer, trimer and the MD-pentamer results than found using standard AMOEBA03. 57 Figure 1c re-examines the anisotropic polarization energy of MB-UCB for the water dimer, but this time for the two multipole truncations, in which we find that both agree very well with the ALMO-EDA polarization energy.…”
Section: Simulation Protocolmentioning
confidence: 99%
“…In a previous article 69 , we assessed the accuracy of the non-covalent terms in AMOEBA for the water dimer and a series of water-ion dimers using a variational EDA approach based on absolutely localized molecular orbitals (ALMO) 67,70 at the highly accurate ωB97X-V/def2-QZVPPD QM level of theory 71,72 . The properties of the second generation ALMO-EDA approach that we find desirable include: (1) the energy decomposition relies on a series of intermediate wavefunctions that each obeys anti-symmetry; (2) the better handling of strongly interacting systems where the accuracy of perturbative approaches might be undermined by convergence issues; (3) the use of a high-quality density functional that adequately captures electron correlation and other effects for weakly interacting systems as benchmarked against the references obtained with high-level correlated methods (see Ref.…”
Section: Introductionmentioning
confidence: 99%
“…where the frozen term can be further decomposed into contributions from permanent electrostatics (∆E ELEC ), Pauli repulsion (∆E PAULI ), and dispersion interaction (∆E DISP ). [52][53][54] Such a decomposition is usually performed at a single given geometry and thus we refer to this approach as the vertical ALMO-EDA thereafter. For details regarding the physical meaning and mathematical definition of each of these terms, we refer the reader to our previous publications.…”
Section: Vertical Vs Adiabatic Almo-edamentioning
confidence: 99%