The superoxide-generating NADPH oxidase complex of phagocytes consists of a membranal heterodimeric flavocytochrome (cytochrome b 559 ), composed of gp91 phox and p22 phox subunits, and four cytosolic proteins, p47phox , p67 phox , p40 phox , and the small GTPase Rac (1 or 2). All redox stations involved in electron transport from NADPH to oxygen are located in gp91 phox . NADPH oxidase activation is the consequence of assembly of cytochrome b 559 with cytosolic proteins, a process reproducible in a cell-free system, consisting of phagocyte membranes, and recombinant cytosolic components, activated by an anionic amphiphile. p22phox is believed to act as a linker between the cytosolic components and gp91phox . We applied "peptide walking" to mapping of domains in p22 phox participating in NADPH oxidase assembly. Ninety one synthetic overlapping pentadecapeptides, spanning the p22 phox sequence, were tested for the ability to inhibit NADPH oxidase activation in the cell-free system and to bind individual cytosolic NADPH oxidase components. We conclude the following. 1) The p22 phox subunit of cytochrome b 559 serves as an anchor for both p47 phox and p67 phox . 2) p47 phox binds not only to the proline-rich region, located at residues 151-160 in the cytosolic C terminus of p22 phox , but also to a domain (residues 51-63) located on a loop exposed to the cytosol. 3) p67 phox shares with p47 phox the ability to bind to the proline-rich region (residues 151-160) and also binds to two additional domains, in the cytosolic loop (residues 81-91) and at the start of the cytosolic tail (residues 111-115). 4) The binding affinity of p67 phox for p22 phox peptides is lower than that of p47 phox . 5) Binding of both p47 phox and p67 phox to proline-rich p22 phox peptides occurs in the absence of an anionic amphiphile. A revised membrane topology model of p22 phox is proposed, the core of which is the presence of a functionally important cytosolic loop (residues 51-91).