Recent
efforts in the study of vector-borne parasitic diseases
(VBPDs) have emphasized an increased consideration for preventing
drug resistance and promoting the environmental safety of drugs, from
the beginning of the drug discovery pipeline. The intensive use of
the few available antileishmanial drugs has led to the spreading of
hyper-resistant Leishmania infantum strains, resulting in a chronic burden of the disease. In the present
work, we have investigated the biochemical mechanisms of resistance
to antimonials, paromomycin, and miltefosine in three drug-resistant
parasitic strains from human clinical isolates, using a whole-cell
mass spectrometry proteomics approach. We identified 14 differentially
expressed proteins that were validated with their transcripts. Next,
we employed functional association networks to identify parasite-specific
proteins as potential targets for novel drug discovery studies. We
used SeqAPASS analysis to predict susceptibility based on the evolutionary
conservation of protein drug targets across species. MATH-domain-containing
protein, adenosine triphosphate (ATP)-binding cassette B2, histone
H4, calpain-like cysteine peptidase, and trypanothione reductase emerged
as top candidates. Overall, this work identifies new biological targets
for designing drugs to prevent the development of Leishmania drug resistance, while aligning with One Health principles that
emphasize the interconnected health of people, animals, and ecosystems.