Melanomas harboring BRAF mutation (V600E) are known to recur frequently
following treatment with BRAF inhibitors (BRAFi) despite a high initial response
rate. Our previous study has uncovered that BRAFi-resistant melanoma (BR) cells
are vulnerable to arginine deprivation. It has been reported that naïve
melanoma cells undergo autophagy and re-express argininosuccinate synthetase 1
(ASS1) to enable them to synthesize arginine for survival when encountering
arginine deprivation. Abolishing these two factors in BR cells confers
sensitivity to arginine deprivation. In this report, we further demonstrated
that downregulation of AMPK-α1 in BR cells is a major factor
contributing to impairment of autophagy as evidenced by decreased autophagosome
formation. These BR cells also showed a metabolic shift from glucose to arginine
dependence, which was supported by decreased expressions of GLUT1 (glucose
transporter) and hexokinase II (HKII) coupled with less glucose uptake but high
levels of arginine transporter CAT-2 expression. Furthermore, silencing CAT-2
expression also distinctly attenuated BR cell proliferation. Notably, when
naïve melanoma cells became BR cells by long-term exposure to BRAFi, a
stepwise degradation of AMPK-α1 was initiated via
ubiquitin-proteasome system (UPS). We discovered that a novel E3 ligase, RING
finger 44 (RNF44), is responsible for promoting AMPK-α1 degradation in
BR cells. RNF44 expression in BR cells was upregulated by transcription factor
CREB triggered by hyperactivation of ERK/AKT. High levels of RNF44 corresponding
to low levels of AMPK-α1 appeared in BR xenografts and melanoma tumor
samples from BR and BRAFi/MEK inhibitor (MEKi)-resistant (BMR) melanoma
patients. Similar to BR cells, BMR cells were also sensitive to arginine
deprivation. Our study provides a novel insight into the mechanism whereby BRAFi
or BRAFi/MEKi resistance drives proteasomal degradation of AMPK-α1 and
consequently regulates autophagy and metabolic reprogramming in melanoma
cells.