Arginine-, d-arginine-vasopressin, and their inverso analogues in micellar and liposomic models of cell membrane: CD, NMR, and molecular dynamics studies
Abstract:We describe the synthesis, pharmacological properties, and structures of antidiuretic agonists, arginine vasopressin (AVP) and [d-Arg8]-vasopressin (DAVP), and their inverso analogues. The structures of the peptides are studied based on micellar and liposomic models of cell membranes using CD spectroscopy. Additionally, three-dimensional structures in mixed anionic–zwitterionic micelles are obtained using NMR spectroscopy and molecular dynamics simulations. NMR data have shown that AVP and DAVP tend to adopt t… Show more
“…In summary, addition of the liposomes to the water differentiated the shapes of the CD spectra of vasopressin‐like peptides. Results of our recent studies confirmed the previously ones, that the smallest differences occurred with zwitterionic DPPC, the largest‐with anionic DPPG, and intermediate ones‐with mixed anionic‐zwitterionic liposomes. Moreover, upon increasing the negative charge at the liposomes surface, the intensity of 227‐nm band increases for both strong antidiuretic agonists, dAVP and dDAVP, especially for the more selective latter one.…”
Section: Resultssupporting
confidence: 89%
“…In addition, with dAVP and dDAVP the 268‐nm band does not show two distinct shoulders in contrast to those in aqueous environment and the inverso analogs in lipid solution. In the long‐wavelength CD spectra of vasopressin‐like peptides, a slight inflection in the CD curve in water emerges around 250 nm, which completely disappears in the liposome solution . The same pattern has now been followed with both dAVP and dDAVP.…”
Section: Resultsmentioning
confidence: 67%
“… The differences between the amide proton chemical shifts of native vasopressin (AVP) and its analogs: dAVP (black), inverso ‐dAVP (gray), dDAVP (dark gray) and inverso ‐dDAVP (light gray), (Δδ NH = δ analog – δ AVP ). For AVP the values are taken from.…”
Section: Resultsmentioning
confidence: 99%
“…The complexes of the peptides with the mixed anionic‐zwitterionic micelles were obtained by their spontaneous formation during the first step of the MD simulations. We used the same procedure as reported previously …”
“…In summary, addition of the liposomes to the water differentiated the shapes of the CD spectra of vasopressin‐like peptides. Results of our recent studies confirmed the previously ones, that the smallest differences occurred with zwitterionic DPPC, the largest‐with anionic DPPG, and intermediate ones‐with mixed anionic‐zwitterionic liposomes. Moreover, upon increasing the negative charge at the liposomes surface, the intensity of 227‐nm band increases for both strong antidiuretic agonists, dAVP and dDAVP, especially for the more selective latter one.…”
Section: Resultssupporting
confidence: 89%
“…In addition, with dAVP and dDAVP the 268‐nm band does not show two distinct shoulders in contrast to those in aqueous environment and the inverso analogs in lipid solution. In the long‐wavelength CD spectra of vasopressin‐like peptides, a slight inflection in the CD curve in water emerges around 250 nm, which completely disappears in the liposome solution . The same pattern has now been followed with both dAVP and dDAVP.…”
Section: Resultsmentioning
confidence: 67%
“… The differences between the amide proton chemical shifts of native vasopressin (AVP) and its analogs: dAVP (black), inverso ‐dAVP (gray), dDAVP (dark gray) and inverso ‐dDAVP (light gray), (Δδ NH = δ analog – δ AVP ). For AVP the values are taken from.…”
Section: Resultsmentioning
confidence: 99%
“…The complexes of the peptides with the mixed anionic‐zwitterionic micelles were obtained by their spontaneous formation during the first step of the MD simulations. We used the same procedure as reported previously …”
“…The starting coordinates of the DPC micelle-water system were taken from simulations conducted by Tieleman et al [36]. A single molecule of DPC was constructed on the basis of previously published parameters [37,38]. The pre-built hydrated DPC micelle consisted of 65 DPC monomers and 6305 water molecules.…”
Section: Construction Of Peptides In Dpc Micelle and MD Simulationsmentioning
A B S T R A C TThe transporter associated with antigen processing (TAP) directly participates in the immune response as a key component of the cytosolic peptide to major histocompatibility complex (MHC) class I protein loading machinery. This makes TAP an important target for viruses avoiding recognition by CD8+ T lymphocytes. Its activity can be suppressed by the UL49.5 protein produced by bovine herpesvirus 1, although the mechanism of this inhibition has not been understood so far.Therefore, the main goal of our study was to investigate the 3D structure of bovine herpesvirus 1 -encoded UL49.5 protein. The final structure of the inhibitor was established using circular dichroism (CD), 2D nuclear magnetic resonance (NMR), and molecular dynamics (MD) in membrane mimetic environments. In NMR studies, UL49.5 was represented by two fragments: the extracellular region (residues 1-35) and the transmembraneintracellular fragment (residues 36-75), displaying various functions during viral invasion. After the empirical structure determination, a molecular docking procedure was used to predict the complex of UL49.5 with the TAP heterodimer.Our results revealed that UL49.5 adopted a highly flexible membrane-proximal helical structure in the extracellular part. In the transmembrane region, we observed two short α-helices. Furthermore, the cytoplasmic part had an unordered structure. Finally, we propose three different orientations of UL49.5 in the complex with TAP. Our studies provide, for the first time, the experimental structural information on UL49.5 and structurebased insight in its mechanism of action which might be helpful in designing new drugs against viral infections.
Herpesviruses are the most prevalent viruses that infect the human and animal body. They can escape a host immune response in numerous ways. One way is to block the TAP complex so that viral peptides, originating from proteasomal degradation, cannot be transported to the endoplasmic reticulum. As a result, a reduced number of MHC class I molecules appear on the surface of infected cells and, thus, the immune system is not efficiently activated. BoHV‐1‐encoded UL49.5 protein is one such TAP transporter inhibitor. This protein binds to TAP in such a way that its N‐terminal fragment interacts with the loops of the TAP complex, and the C‐terminus stimulates proteasomal degradation of TAP. Previous studies have indicated certain amino acid residues, especially the RRE(9–11) motif, within the helical structure of the UL49.5 N‐terminal fragment, as being crucial to the protein's activity. In this work, we investigated the effects of modifications within the RRE region on the spatial structure of the UL49.5 N‐terminal fragment. The introduced RRE(9–11) variations were designed to abolish or stabilize the structure of the α‐helix and, consequently, to increase or decrease protein activity compared to the wild type. The terminal structure of the peptides was established using circular dichroism (CD), 2D nuclear magnetic resonance (NMR), and molecular dynamics (MD) in membrane‐mimetic or membrane‐model environments. Our structural results show that in the RRE(9–11)AAA and E11G peptides the helical structure has been stabilized, whereas for the RRE(9–11)GGG peptide, as expected, the helix structure has partially unfolded compared to the native structure. These RRE modifications, in the context of the entire UL49.5 proteins, slightly altered their biological activity in human cells.
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