Arenimonas oryziterrae sp. nov., isolated from a field of rice (Oryza sativa L.) managed under a no-tillage regime, and reclassification of Aspromonas composti as Arenimonas composti comb. nov.

Abstract

Arenimonas oryziterrae sp. nov., isolated from a field of rice (Oryza sativa L.) managed under a notillage regime, and reclassification of Aspromonas composti as Arenimonas composti comb. nov. The taxonomic position of a novel bacterial strain, YC6267 T isolated from a field of rice (Oryza sativa L.) managed under a no-tillage regime in Jinju, Korea, was studied using a polyphasic taxonomic approach. Cells of the strain were Gram-stain-negative, rod-shaped and aerobic. It grew at 15-37 6C (optimum at 28 6C). Growth of the strain occurred between pH 5.0 and 10.0, with an optimum of pH 7.0-8.0. The G+C content of the total DNA was 65.8 mol%. The 16S rRNA gene sequence of the strain was most closely related to species of the genera Arenimonas (95.6-94.4 %) and Aspromonas (95.1 %), with ,95.0 % similarity to species of the genus Lysobacter and other genera of the family Xanthomonadaceae. Chemotaxonomic data (major quinone Q-8; major polar lipids phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol; and major fatty acids iso-C 15 : 0 , iso-C 14 : 0 , iso-C 16 : 0 , and iso-C 17 : 1 v9c) supported the affiliation of strain YC6267 T to the genus Arenimonas. Phylogenetic analysis based on 16S rRNA gene sequences and biochemical and physiological characteristics strongly supported the genotypic and phenotypic differentiation of strain YC6267 T from described species of the genus Arenimonas. Strain YC6267 T , therefore, represents a novel species, for which the name Arenimonas oryziterrae sp. nov. is proposed. The type strain is YC6267 T (5KCTC 22247 T 5DSM 21050 T ). In addition, the reclassification of Aspromonas composti as Arenimonas composti comb. nov. is proposed (type strain TR7-09 T 5KCTC 12666 T 5DSM 18010 T ). A common line of descent and a number of shared phenotypic traits support this reclassification.

Improved rhizoremediation for decabromodiphenyl ether (BDE-209) in E-waste contaminated soils

“…3). Xanthomonadales was extensively identified in planted soils, wood substrate and sediments (Aslam et al, 2009;Hervé et al, 2014;Schmalenberger et al, 2013) and was stimulated during vermicomposting and might be capable of enhancing the PCP biodegradation in soil (Lin et al, 2016). Our results also showed that the bacteria in the orders of Actinomycetale, Clostridiales, Sphingomonadales and Cytophagales enriched in the treatments with compost (Fig.…”

Arenimonas subflava sp. nov., isolated from a drinking water network, and emended description of the genus Arenimonas

“…The type species of the genus is Arenimonas donghaensis which was isolated from seashore sand in Pohang city, South Korea (Kwon et al , 2007). The type strain of Arenimonas malthae (Young et al , 2007) was isolated from a diesel-oil-contaminated site located in Chyai county, Taiwan, Arenimonas oryziterrae (Aslam et al , 2009) from a rice field in Jinju, South Korea, Arenimonas composti (Jin et al , 2007; Aslam et al , 2009) and Arenimonas daejeonensis (Jin et al , 2012) from compost in Daejeon, South Korea, Arenimonas metalli (Chen et al , 2012) from Hongshan Iron Mine, Daye City, Hubei province, China and Arenimonas daechungensis (Huy et al , 2013) was isolated from a sediment sample taken from Daechung Reservoir, South Korea.…”

On the way to identify microorganisms in drinking water distribution networks via DNA analysis of the gut content of freshwater isopods

“…The taxon Arenimonas spec. is known from different Asian habitats: Arenimonas oryziterrae from a Korean rice field (Aslam et al, 2009), Arenimonas donghaensis of Korean sea sand (Kwon et al, 2007), A. aquaticum from a Korean freshwater reservoir , Arenimonas metalli from a Chinese iron look (Chen et al, 2012), Arenimonas daechungensis from the sediment of an eutrophic freshwater reservoir (Huy et al, 2013) and Arenimonas daejeonensis from compost (Jin et al, 2012). These species are gram-negative aerobic bacteria.…”