interactions between the analyte and the carbon nanotube (electrostatic interactions, π-π stacking, dispersion forces, hydrophobic effect, etc). The interest of the incorporation of boron nitride nanotubes (BNNTs) [6] or single wall carbon nanotubes (SWCNT) [7] into a polymeric chromatographic support to enhance the performance of the HPLC isocratic mode separation quality for small size molecules was clearly demonstrated. The performance of the monolithic column indicated that SWCNTs and BNNTs could enhance the chromatographic retention of small neutral molecules due to the hydrophobic interactions between nanotubes and analytes. Acid-treated SWCNT and MWCNT were coated into fused silica capillaries columns and used for capillary electrochromatography (CEC) applications; these capillaries were applied for base line separation of a mixture of seven nitrogen-containing aromatic compounds [8] and for the electrophoretic determination of different pharmaceutical compounds [9]. Fluorinated stationary phases generated specific selectivity, different elution orders for some class of compounds than those observed on the classical alkyl C8 or C18 stationary phases [10][11][12][13][14][15]. Nanotubes are insoluble in most common solvents; this poor solubility is the main obstacle of their using. Many efforts have been made to overcome this barrier, and various strategies including surface modifications and functionalization approaches have been reported in the literature. The aim of this study was to investigate the influence of BNNT and F-BNNT on chromatographic retention and separation properties of a monolithic polymeric stationary phase. A simple way was described to prepare and maintain a uniform matrix in the capillary column. The fabricated columns were characterized and their performance evaluated for the retention and separation of different model compounds.Abstract A novel HPLC stationary phase based on fluorinated boron nitride nanotubes (F-BNNTs) incorporated into a monolithic polymeric material was developed. This F-BNNT stationary phase was synthesized to combine the analytical performance of boron nitride nanotubes and the fluorine-based unique selectivity for polar compounds. This F-BNNT column appeared to work well when fluorinated or halogenated compounds were encountered.